$ sudo perl /mnt/c/I-TASSER5.1/I-TASSERmod/runI-TASSER.pl -libdir /home/user/ITLIB -seqname seq -datadir /mnt/c/I-TASSER5.1/example -datadir /mnt/c/I-TASSER5.1/example
Your setting for running I-TASSER is:
-pkgdir = /mnt/c/I-TASSER5.1
-libdir = /home/user/ITLIB
-java_home = /usr
-seqname = seq
-datadir = /mnt/c/I-TASSER5.1/example
-outdir = /mnt/c/I-TASSER5.1/example
-runstyle = serial
-homoflag = real
-idcut = 1
-ntemp = 20
-nmodel = 5
-light = false
-hours = 50
-LBS = false
-EC = false
-GO = false
1. make seq.txt and rmsinp
Your protein contains 143 residues:
> seq
MYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLA
LQDSGLEVNIVTDSQYALGIITQWIHNWKKRGWPVKNVDLVNQIIEQLIKKEKVYLAWVP
AHKGIGGNEQVDKLVSAGIRKVL
2.1 run Psi-blast
2.2 Secondary structure prediction was done before.
2.3 Predict solvent accessibility...
2.4 run pairmod
pair exist
3.1 do threading
/mnt/c/I-TASSER5.1/example/init.PPAS exists
/mnt/c/I-TASSER5.1/example/init.dPPAS exists
/mnt/c/I-TASSER5.1/example/init.dPPAS2 exists
/mnt/c/I-TASSER5.1/example/init.Env-PPAS exists
start serial threading MUSTER
/tmp/root/ITseq
/mnt/c/I-TASSER5.1/example/MUSTER_seq
Illegal division by zero at /mnt/c/I-TASSER5.1/example/MUSTER_seq line 599.
hostname: STATION-PCMC
starting time: Sat May 20 09:34:01 CEST 2023
pwd: /tmp/root/ITseq
running Psi-blast .....
running zalign .....
/mnt/c/I-TASSER5.1/example/init.wPPAS exists
/mnt/c/I-TASSER5.1/example/init.wdPPAS exists
/mnt/c/I-TASSER5.1/example/init.wMUSTER exists
3.2 make restraints
4.1 run simulation
run 14 serial simulations
run simulation job 1 / 14
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 2 / 14
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 3 / 14
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 4 / 14
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 5 / 14
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 6 / 14
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 7 / 14
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 8 / 14
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 9 / 14
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 10 / 14
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 11 / 14
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 12 / 14
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 13 / 14
bzip2: Can't open input file rep*.tra: No such file or directory.
run simulation job 14 / 14
bzip2: Can't open input file rep*.tra: No such file or directory.
5.1 do clustering
No. of trajectory files: 0
bzip2: Can't open input file rep*.tra: No such file or directory.
Moderator: robpearc
Re: bzip2: Can't open input file rep*.tra: No such file or directory.
Dear user,
Can you check if init.dat file exists in /mnt/c/I-TASSER5.1/example folder?
Best
IT Team
Can you check if init.dat file exists in /mnt/c/I-TASSER5.1/example folder?
Best
IT Team
Re: bzip2: Can't open input file rep*.tra: No such file or directory.
Hi
Thank you for your responce
Yes i have inti.dat in the folder /I-TASSER5.1/example
Thank you for your responce
Yes i have inti.dat in the folder /I-TASSER5.1/example
- Attachments
-
- init.rar
- (47.61 KiB) Downloaded 5 times
Re: bzip2: Can't open input file rep*.tra: No such file or directory.
Dear user,
It seems the template file is correctly generated. Could you 'ls' your example folder, or zip the example folder and attach in the response
Best
IT Team
It seems the template file is correctly generated. Could you 'ls' your example folder, or zip the example folder and attach in the response
Best
IT Team
Re: bzip2: Can't open input file rep*.tra: No such file or directory.
Hello
Yes I can
I have try to do with 2 different computer and with version 5.1 and 5.2 always the same problem
Yes I can
I have try to do with 2 different computer and with version 5.1 and 5.2 always the same problem
- Attachments
-
- example.rar
- (772.26 KiB) Downloaded 3 times
Re: bzip2: Can't open input file rep*.tra: No such file or directory.
Can you please help me according to attached file
Re: bzip2: Can't open input file rep*.tra: No such file or directory.
Dear user,
Thank you for your files, we are working on debugging the program and will let you know the issue ASAP.
Best
IT Team
Thank you for your files, we are working on debugging the program and will let you know the issue ASAP.
Best
IT Team