Home Research Services Publications People Teaching Job Opening News
Online Services

I-TASSER QUARK LOMETS COACH COFACTOR MUSTER SEGMER FG-MD ModRefiner REMO SPRING COTH BSpred SVMSEQ ANGLOR BSP-SLIM SAXSTER ThreaDom EvoDesign GPCR-I-TASSER BindProf BindProfX ResQ IonCom STRUM

TM-score TM-align MMalign NWalign EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot I-TASSER-MR

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP TM-fold DECOYS POTENTIAL RW HPSF CASP7 CASP8 CASP9 CASP10 CASP11 CASP12

LS-align RESULTS PAGE

Name of Query Ligand:   HN3_A_1049_tran
Name of Template Ligand:   2SK_A_5009
Atom Number of Query Ligand:  46
Atom Number of Template Ligand:  38

Rigid LS-align Results
  • PC-score:
    PC-score = 0.5704      P-value = 0.023042 (if normalized by atom number of Query Ligand)
    PC-score = 0.6971      P-value = 0.003168 (if normalized by atom number of Template Ligand)
    (You should use PC-score normalized by the atom number of the reference ligand)
  • Jaccard Ratio:    0.2903
  • RMSDLS:    1.5161
  • Alignment Information:
    (":" denotes aligned atom pairs of d < 1.0 A, "." denotes other aligned atoms)
    Query Atom Index:         5    7   10   11   12   13   18   20   22
    Query Atom Type:         N    C    C    C    C    C    C    C    C
    Aligned Tag:         :    :    :    :    :    :    :    :    :
    Templ Atom Type:         C    C    C    C    C    C    C    C    C
    Templ Atom Index:        13   14   10    9   12   11    7    8   18
Visualization (Query ligand in yellow and template ligand in red)
Rigid alignment (Download the rigid superposition)

yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218