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USalign - sequence dependent alignment

Last post by martingb « Mon Jun 30, 2025 11:53 am

by martingb » Mon Jun 30, 2025 11:53 am

0 Replies

42 Views

Last post by martingb
Mon Jun 30, 2025 11:53 am
I would like to know the meaning represented by each dimension of the contact map, distance map and HB map.

Last post by jlspzw « Sat Jun 28, 2025 12:40 pm
Replies: 1
by Liuyu_20000419 » Tue Jun 24, 2025 3:28 pm

1 Replies

280 Views

Last post by jlspzw
Sat Jun 28, 2025 12:40 pm
Request for TM-score and RMSD of Other I-TASSER Models

Last post by ITASSERteam « Sat Jun 28, 2025 7:52 am
Replies: 1
by bladehare » Mon Jun 23, 2025 7:50 am

1 Replies

283 Views

Last post by ITASSERteam
Sat Jun 28, 2025 7:52 am
Unable to Download the Library File 'CE.tar.bz2'

Last post by liujie1993228 « Sat Jun 28, 2025 2:35 am

by liujie1993228 » Sat Jun 28, 2025 2:35 am

0 Replies

73 Views

Last post by liujie1993228
Sat Jun 28, 2025 2:35 am
Protien format

Last post by Eveive « Fri Jun 27, 2025 7:20 am
Replies: 3
by Muhammed » Sat Jun 08, 2024 7:54 am

3 Replies

98886 Views

Last post by Eveive
Fri Jun 27, 2025 7:20 am
D-I-TASSER results

Last post by Abd_Compbio « Wed Jun 18, 2025 10:41 am
Replies: 7
by Abd_Compbio » Fri Jun 06, 2025 7:03 am

7 Replies

105955 Views

Last post by Abd_Compbio
Wed Jun 18, 2025 10:41 am
itasser model comptability with ucsf chimera strucure minimization

Last post by Williami « Tue Jun 17, 2025 3:07 am
Replies: 4
by zbu@ccny.cuny.edu » Wed Jan 17, 2024 4:31 pm

4 Replies

27662 Views

Last post by Williami
Tue Jun 17, 2025 3:07 am
Use of D-I-TASSER for structure prediction

Last post by junh « Mon Jun 16, 2025 1:20 pm
Replies: 6
by Abd_Compbio » Sun Jun 08, 2025 8:46 am

6 Replies

139685 Views

Last post by junh
Mon Jun 16, 2025 1:20 pm
How does it compare with classic docking

Last post by Trisheye « Mon Jun 16, 2025 9:25 am

by Trisheye » Mon Jun 16, 2025 9:25 am

0 Replies

156 Views

Last post by Trisheye
Mon Jun 16, 2025 9:25 am
the two TM-scores from US-align show a large discrepancy

Last post by loraleednelson « Mon Jun 16, 2025 6:30 am
Replies: 9
by evans » Tue Oct 08, 2024 6:12 am

9 Replies

335756 Views

Last post by loraleednelson
Mon Jun 16, 2025 6:30 am
how to view the interaction sites between the two proteins in the results?

Last post by ITASSERteam « Fri Jun 06, 2025 12:07 pm
Replies: 1
by anhuifei » Wed Jun 04, 2025 2:41 am

1 Replies

20777 Views

Last post by ITASSERteam
Fri Jun 06, 2025 12:07 pm
Results not available from COACH server

Last post by ITASSERteam « Fri Jun 06, 2025 12:03 pm
Replies: 6
by sheila.artesero » Fri May 03, 2024 9:44 am

6 Replies

35839 Views

Last post by ITASSERteam
Fri Jun 06, 2025 12:03 pm
CR-I-Tasser

Last post by Wagary89 « Thu Jun 05, 2025 3:23 am
Replies: 3
by mforoozm » Sun Apr 07, 2024 4:11 pm

3 Replies

140465 Views

Last post by Wagary89
Thu Jun 05, 2025 3:23 am
I really hope I can retrieve the sequence that I submitted.

Last post by hujun1 « Thu Jun 05, 2025 1:39 am
Replies: 4
by Wasen1989 » Wed Jun 04, 2025 6:50 am

4 Replies

8116 Views

Last post by hujun1
Thu Jun 05, 2025 1:39 am
I-TASSER standalone errors

Last post by Craig C. Bennett « Wed Jun 04, 2025 3:06 am
Replies: 6
by harvey@bucknell.edu » Tue Mar 19, 2024 6:16 pm

6 Replies

200672 Views

Last post by Craig C. Bennett
Wed Jun 04, 2025 3:06 am
Use DeepMSA2 output in ColabFold or AlphaFold

Last post by maruusa « Tue Jun 03, 2025 4:09 am
Replies: 2
by Qiping » Wed Mar 13, 2024 3:28 pm

2 Replies

83135 Views

Last post by maruusa
Tue Jun 03, 2025 4:09 am
Please make sure the directory /tmp/ is writable for you

Last post by sloperun3az « Sat May 31, 2025 3:18 am
Replies: 5
by tgrear » Wed Sep 07, 2022 8:22 pm

5 Replies

104312 Views

Last post by sloperun3az
Sat May 31, 2025 3:18 am
D-I-TASSER jobs can't be completed.

Last post by junh « Fri May 30, 2025 4:44 pm
Replies: 2
by sunnyrab » Fri May 30, 2025 2:55 am

2 Replies

33981 Views

Last post by junh
Fri May 30, 2025 4:44 pm
I-TASSER results for your protein: highlighting AA

Last post by bonkmoneybag « Thu May 29, 2025 7:56 am
Replies: 1
by olescaff@utmb.edu » Tue Oct 15, 2024 7:31 pm

1 Replies

92402 Views

Last post by bonkmoneybag
Thu May 29, 2025 7:56 am
Unable to download databases for DeepMSA2

Last post by junh « Sun May 25, 2025 2:03 am
Replies: 4
by dimi » Fri May 16, 2025 12:48 pm

4 Replies

166541 Views

Last post by junh
Sun May 25, 2025 2:03 am
COACH job still running after 1 month

Last post by ITASSERteam « Thu May 22, 2025 5:47 am
Replies: 2
by chuatx » Wed May 29, 2024 6:12 am

2 Replies

205651 Views

Last post by ITASSERteam
Thu May 22, 2025 5:47 am
I have question.

Last post by Vennpaul « Tue Dec 03, 2024 4:29 am
Replies: 2
by Butertench1975 » Wed Nov 06, 2024 6:44 am

2 Replies

157080 Views

Last post by Vennpaul
Tue Dec 03, 2024 4:29 am
Some files may missing in CR-I-TASSER

Last post by responsivecats « Tue Dec 03, 2024 2:43 am
Replies: 2
by cooper » Tue Apr 19, 2022 2:16 am

2 Replies

177161 Views

Last post by responsivecats
Tue Dec 03, 2024 2:43 am
Help with CRISPR Base Editing Efficiency in Cell Cultures

Last post by pigkang « Mon Dec 02, 2024 7:38 am
Replies: 2
by JacquelineJCastle » Sat Nov 16, 2024 1:47 am

2 Replies

93096 Views

Last post by pigkang
Mon Dec 02, 2024 7:38 am
DeepMSA error from CR-I-TASSER

Last post by saucesavings « Tue Nov 26, 2024 5:05 am
Replies: 4
by ning » Sat Mar 04, 2023 3:17 pm

4 Replies

133854 Views

Last post by saucesavings
Tue Nov 26, 2024 5:05 am
DMFold, DeepMSA2 and I-TASSER-based methods updates

Last post by TomSimth « Mon Nov 18, 2024 9:38 am
Replies: 3
by jlspzw » Sat Feb 10, 2024 9:18 pm

3 Replies

114038 Views

Last post by TomSimth
Mon Nov 18, 2024 9:38 am
Take into account pLDDT into TM-score

Last post by throughyuletide « Fri Nov 15, 2024 2:33 am
Replies: 3
by mariaartlle » Fri Dec 09, 2022 11:13 am

3 Replies

127471 Views

Last post by throughyuletide
Fri Nov 15, 2024 2:33 am
I-TASSER Illegal division by zero during MUSTER

Last post by khainhienluu « Sat Nov 09, 2024 9:35 am
Replies: 9
by jimgene » Sun Jan 29, 2023 8:12 am

9 Replies

220265 Views

Last post by khainhienluu
Sat Nov 09, 2024 9:35 am
Information regarding restraint files generated and used by I-TASSER standalone program

Last post by illnessused « Mon Nov 04, 2024 1:42 am
Replies: 4
by rupesh » Wed Aug 31, 2022 9:53 am

4 Replies

148729 Views

Last post by illnessused
Mon Nov 04, 2024 1:42 am
EvoDesign

Last post by nanalyly « Wed Oct 30, 2024 9:43 am
Replies: 2
by saifrahm » Mon Jan 22, 2024 8:13 pm

2 Replies

153331 Views

Last post by nanalyly
Wed Oct 30, 2024 9:43 am
probelm in demo2

Last post by phisola25 « Fri Oct 25, 2024 5:16 pm
Replies: 3
by ladimafakher » Sat Aug 26, 2023 12:33 pm

3 Replies

143823 Views

Last post by phisola25
Fri Oct 25, 2024 5:16 pm
error when running i-tasser

Last post by emmausa « Tue Oct 22, 2024 1:48 am
Replies: 7
by fatin_izz » Tue Jul 06, 2021 8:38 pm

7 Replies

175515 Views

Last post by emmausa
Tue Oct 22, 2024 1:48 am
java.lang.NumberFormatException: For input string: -NAN

Last post by sarausa « Tue Oct 22, 2024 1:46 am
Replies: 9
by afif » Fri Feb 09, 2024 8:32 pm

9 Replies

247876 Views

Last post by sarausa
Tue Oct 22, 2024 1:46 am
error in STRUM

Last post by neha18_cmm « Sat Oct 12, 2024 8:27 am

by neha18_cmm » Sat Oct 12, 2024 8:27 am

0 Replies

79709 Views

Last post by neha18_cmm
Sat Oct 12, 2024 8:27 am
BioLip data

Last post by zcx@umich.edu « Wed Oct 09, 2024 1:59 am
Replies: 1
by asnascimento » Tue Sep 17, 2024 7:33 pm

1 Replies

125691 Views

Last post by zcx@umich.edu
Wed Oct 09, 2024 1:59 am
[3D structure require] The new protein no information of domain available

Last post by markangelo « Tue Oct 08, 2024 1:49 am
Replies: 7
by KOUKAB IMRAN » Mon May 31, 2021 5:09 am

7 Replies

141868 Views

Last post by markangelo
Tue Oct 08, 2024 1:49 am
output interpretation

Last post by terassda « Fri Sep 20, 2024 9:27 am
Replies: 9
by nmrworker » Mon May 10, 2021 4:32 pm

9 Replies

79200 Views

Last post by terassda
Fri Sep 20, 2024 9:27 am
is there a version of the software that can read cryo-EM density maps and mmcif input files?

Last post by ITASSERteam « Sat Sep 14, 2024 2:23 am
Replies: 3
by zbiao » Fri Jul 12, 2024 7:50 am

3 Replies

58789 Views

Last post by ITASSERteam
Sat Sep 14, 2024 2:23 am
cpxDeepMSA

Last post by irlpilchard « Mon Sep 09, 2024 4:56 am
Replies: 1
by JakobReber » Thu Aug 29, 2024 12:37 pm

1 Replies

12108 Views

Last post by irlpilchard
Mon Sep 09, 2024 4:56 am
IonCom - Missing Probabilities for Predicted Binding Sites

Last post by XiZhang « Mon Sep 02, 2024 1:57 am
Replies: 1
by saakdr@missouri.edu » Sat Aug 31, 2024 4:08 am

1 Replies

15478 Views

Last post by XiZhang
Mon Sep 02, 2024 1:57 am

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