Search found 5 matches

by rupesh
Wed Aug 31, 2022 9:53 am
Forum: Main Forum
Topic: Information regarding restraint files generated and used by I-TASSER standalone program
Replies: 1
Views: 300

Information regarding restraint files generated and used by I-TASSER standalone program

Hello! I am looking for information regarding restraint files that are generated from the threading templates viz., comb.dat, comb8CA.dat, combCA.dat, dist.dat, distL.dat, and par.dat. I know that these files are generated by mkinit.pl program which also has some information regarding them in the co...
by rupesh
Tue Jun 07, 2022 7:53 am
Forum: Main Forum
Topic: Error in final PDB model generated by I-TASSER standalone program
Replies: 2
Views: 528

Re: Error in final PDB model generated by I-TASSER standalone program

Thank you for your response. The zipped file is attache here.
by rupesh
Wed Jun 01, 2022 5:45 am
Forum: Main Forum
Topic: Error in final PDB model generated by I-TASSER standalone program
Replies: 2
Views: 528

Error in final PDB model generated by I-TASSER standalone program

Hello, While running the standalone I-TASSER program for structure prediction, at times I have encountered a problem with one of the predicted final models. The coordinates for atoms in a few residues show some weird values which defy the standard format of a PDB file. The closc and combo files howe...
by rupesh
Thu May 19, 2022 1:40 pm
Forum: Main Forum
Topic: Regarding the second iteration of the TASSER program in the I-TASSER standalone
Replies: 2
Views: 346

Regarding the second iteration of the TASSER program in the I-TASSER standalone

Hello, My query is regarding the downloadable version of I-TASSER. As the name states, a second iteration of TASSER is performed right after the clustering step. While going through the script runI-TASSER.pl, I failed to find the exact location where the second iteration is executed. I am curious to...