Search found 4 matches

by SLarmadillo
Mon Jan 23, 2023 11:19 am
Forum: Main Forum
Topic: unexpected EOF in DeepMSA
Replies: 1
Views: 8032

unexpected EOF in DeepMSA

The following process was automatically exiting and starting over continuously for three days after displaying RuntimeError: unexpected EOF, expected 408096 more bytes. The file might be corrupted. Is this a normal process, or will I never get a result with this Error, and will the process repeat fo...
by SLarmadillo
Thu Jan 19, 2023 12:45 pm
Forum: Main Forum
Topic: Speed up DeepFold by multiple cpu usage?
Replies: 1
Views: 4605

Speed up DeepFold by multiple cpu usage?

Dear Zhang Lab team,

I have seen optional CPU numbers in several scripts in DeepFold. Will it speed up the prediction time if I modify the CPU numbers in each script individually?

best
by SLarmadillo
Fri Jan 13, 2023 1:42 pm
Forum: Main Forum
Topic: Protein-Peptide binding predictions with DeepMSAFold-Multimer
Replies: 1
Views: 4570

Protein-Peptide binding predictions with DeepMSAFold-Multimer

Hi, Thanks to everyone in Zhang Lab for making DeepMSAFold-Multimer an astonishing success! A question regarding the application of DeepMSAFold in Protein-Peptide interactions: Will the DeepMSAFold-Multimer server or the source code version (if available later) support giving short peptide chains as...
by SLarmadillo
Thu Jan 12, 2023 12:21 pm
Forum: Main Forum
Topic: Bug in I-TASSER-MD download_lib.pl
Replies: 1
Views: 4059

Bug in I-TASSER-MD download_lib.pl

The tar -zxvf in line 143 should be replaced with gzip -d. like following: system("gzip -d metaclust_2017_05.fasta.gz >log") == 0 or die "System call failed: $!"; or the download failed due to decompression errors tar: This does not look like a tar archive tar: Skipping to next h...