Zhanglab forum

Thank you for your answer but I still have some doubts... Are the 'Lali' (line 5) and 'Aligned_length' (line 6) values meaning the same? Knowing that TM-score at line 5 is normalized by alignment length (Lali = 15, line 5), which is the same value of Structure 2 length (15 residues, line 3 and L ...

Dears, First of all, thanks for all your work on developing software for structural alignments. I have been using US-align (Version 20241108) guided by sequence alignment as: $ ./USalign 1.pdb.gz 2.pdb.gz -infmt1 0 -infmt2 0 -mol RNA -het 1 -seq -outfmt -1 -o <sup-pathfile> And I have read the paper ...