Search found 4 matches

by al519
Thu Jan 25, 2024 7:48 pm
Forum: Main Forum
Topic: BindProfX Linux tool set-up (2024)
Replies: 6
Views: 12023

Re: BindProfX Linux tool set-up (2024)

I noticed the formula for the final weighted score has changed. Are the 0.75/0.25 weights better than the 0.9/0.4 weights? Here is the relevant code: #FinalScore_list=[x if ',' in m else 0.9*x+0.4*f for x,f,m in \ #zip(XProfScore_list,FoldXScore_list,mutation_list)] FinalScore_list=[0.75*x+0.25*f fo...
by al519
Wed Jan 10, 2024 6:53 pm
Forum: Main Forum
Topic: BindProfX Linux tool set-up (2024)
Replies: 6
Views: 12023

Re: BindProfX Linux tool set-up (2024)

I am in the process of testing it right now. On another note, can any of the BindProfX scripts take advantage of multiple CPU cores or, better yet, GPUs?
by al519
Wed Jan 10, 2024 2:53 pm
Forum: Main Forum
Topic: BindProfX Linux tool set-up (2024)
Replies: 6
Views: 12023

Re: BindProfX Linux tool set-up (2024)

Thank you for getting back to me. I understand the tool should work fine, but I'd like to know whether the instructions in the README are up-to-date because they appear not to be. I want to set up the BindProfX tool as intended, and I would appreciate clarification if its current README is exhaustiv...
by al519
Tue Jan 09, 2024 8:29 pm
Forum: Main Forum
Topic: BindProfX Linux tool set-up (2024)
Replies: 6
Views: 12023

BindProfX Linux tool set-up (2024)

Hi all, I am attempting to set up the BindProfX tool for Linux (https://zhanggroup.org/BindProfX/download/). Upon download, I read the README, which appears a bit outdated. Has anyone set up the BindProfX Linux tool recently? Can you provide a list of what must be done for complete installation? Tha...