Search found 3 matches
- Fri Mar 08, 2024 5:11 pm
- Forum: Main Forum
- Topic: BioLip column names clarification
- Replies: 5
- Views: 72762
Re: BioLip column names clarification
For the Binding Site Number Code, I am still a bit confused. When I look at pdb 2y41 (below is part of the pdb information of the ligands), chain A has 2 ligands(IPM and MN), chain B has 4 ligands(IPM,MN,MN,MN). These I suppose that they should have the following binding site number code: Chain A (B...
- Thu Mar 07, 2024 10:59 pm
- Forum: Main Forum
- Topic: BioLip column names clarification
- Replies: 5
- Views: 72762
Re: BioLip column names clarification
For your response regarding "Ligand serial number": I think you are referring to the "Residue sequence number of the ligand (field _atom_site.auth_seq_id in PDBx/mmCIF format)" in the readme file provided from your website (https://zhanggroup.org/BioLiP/download/readme.txt) but n...
- Tue Mar 05, 2024 6:42 pm
- Forum: Main Forum
- Topic: BioLip column names clarification
- Replies: 5
- Views: 72762
BioLip column names clarification
Hello, Thanks for your great work on the BioLip database! In the dataset I downloaded from your website, there are two columns: “Binding Site Number Code” and “Ligand serial number”. After reading the descriptions provided for the two columns, I’m still not sure what they are referring to. Could you...