Zhanglab forum

There seems to be an issue in the final step of structure refinement, which we are currently investigating and working to resolve. In the meantime, you may use FG-MD (https://zhanglab.comp.nus.edu.sg/FG-MD/) or ModRefiner (https://zhanglab.comp.nus.edu.sg/ModRefiner/) to correct local structural ...

There seems to be an issue in the final step of structure refinement, which we are currently investigating and working to resolve. In the meantime, you may use FG-MD (https://zhanglab.comp.nus.edu.sg/FG-MD/) or ModRefiner (https://zhanglab.comp.nus.edu.sg/ModRefiner/) to correct local structural ...

There seems to be an issue in the final step of structure refinement, which we are currently investigating and working to resolve. In the meantime, you may use FG-MD (https://zhanglab.comp.nus.edu.sg/FG-MD/) or ModRefiner (https://zhanglab.comp.nus.edu.sg/ModRefiner/) to correct local structural ...

junh wrote: ↑Sun Jun 08, 2025 12:04 pm Could you tell us the D-I-TASSER job ID. Thanks.

(JOB ID: D1250)
This was job id,
Thanx!

I am confused about the use of D-I-TASSER for predicting protein structures with no close homology and evolutionarily correlated sequences. In such cases, the predicted structure has numerous errors in its Bond angles, steric clashes, and other aspects. Am I using the wrong tool? If so, what is the ...

I ran a job on the D-I-TASSER server and analyzed the results with MolProbity. Compared to Alphafold3, I expected results to be more aligned with MolProbity score highlighting structural inconsistency, including steric clashes, bond angles, Ramachandran outliers, [/img] etc. Alphafold3 resulted in a ...