Zhanglab forum

There seems to be an issue in the final step of structure refinement, which we are currently investigating and working to resolve. In the meantime, you may use FG-MD (https://zhanglab.comp.nus.edu.sg/FG-MD/) or ModRefiner (https://zhanglab.comp.nus.edu.sg/ModRefiner/) to correct local structural ...

Dear anhuifei, Thank you for using DMFold, and we’re glad to hear that you’ve received the predicted structure for your job DMF042779492. To view the interaction sites between the two proteins, we suggest the following steps: 1. Visualize the Complex in PyMOL The predicted complex structure file (us ...

Dear User, please note that our servers have been permanently moved to https://zhanggroup.org/. Kindly use this new URL to access services and submit your jobs. Thank you for your attention.

Dear TX, We sincerely apologize for the delay in processing your COACH job. Our servers were recently migrated to a new high-performance computing (HPC) cluster, which is now permanently hosted at https://zhanggroup.org/services/. The transition has been completed, and all services, including COACH ...

Yes, many software, such as our software, and Modeller, can do homology modeling while keeping certain residues.

Yes, We have not yet finished it!

Hello Zhang, I once again turn to you for some clarification. I have been playing around with the dataset and I ran into a situation. The main file "BioLiP.txt.gz" has about 800.000+ entries (redundant set), all kinds of ligands included. When downloading the weekly updates (redundant set), I am ...

Our system was in maintenance last week. You can resubmit your job now. Sorry for the inconvenience.

Our system experienced maintenance last week and we apologize for the inconvenience. Your job should have been completed now since our system was back.

It should work now. Sorry for the inconvenience.