Search found 5 matches
- Thu Nov 11, 2021 3:52 am
- Forum: Main Forum
- Topic: Library installation error
- Replies: 12
- Views: 9078
Re: Library installation error
Thank you for the info. Here is a snapshot of my nr folder. But I don't understand this part: "The issue major occurs after this step "$blastdir/blastpgp -b 1000 -j 3 -h 0.001 -d $db -i protein.fasta -C psitmp.chk -Q pssm.txt > blast.out" you can add the command before this line print...
- Thu Nov 04, 2021 5:18 am
- Forum: Main Forum
- Topic: Library installation error
- Replies: 12
- Views: 9078
Re: Library installation error
Hi there, Thank you! I changed the "ITLIB/nr/nr" in runI-TASSER.pl to "ITLIB/nr/" and the problem is fixed. But I got a new problem with blastpgp. The error is "/home/jed/I-TASSER5.1/blast/bin/blastpgp is not working properly, please check". I read the runI-TASSER.pl an...
- Tue Nov 02, 2021 3:16 pm
- Forum: Main Forum
- Topic: Library installation error
- Replies: 12
- Views: 9078
Re: Library installation error
Hello there, yes, I replaced the "yourname". When I used ls, I have "Bfactor CNT DEP download_lib.pl GO ligand map nr PSSM SIG summary BPOCKET databases dotProfiles Enzyme home log MTX PDB receptor stride" in my ITLIB. The databases is my nr database. Thanks, Jed
- Mon Nov 01, 2021 12:11 am
- Forum: Main Forum
- Topic: Library installation error
- Replies: 12
- Views: 9078
Re: Library installation error
Hello there, Thank you for your help. I ran the download_lib.pl again and it downloaded everything successfully this time. However, when I ran runI-TASSER.pl, I still got the error message: "Your library files are not complete, please download library with the script download_lib.pl" The c...
- Thu Oct 28, 2021 3:11 pm
- Forum: Main Forum
- Topic: Library installation error
- Replies: 12
- Views: 9078
Re: Library installation error
Hello there, I am having issues with installing the library. The error message I had was: "bzip2: Data integrity error when decompressing. Input file = (stdin), output file = (stdout) It is possible that the compressed file(s) have become corrupted. You can use the -tvv option to test integrity...