Zhanglab forum

Dear user, Due to the resource limitation, we limited the sequence to 750AA current. Please find our pre-build model by D-I-TASSER for your target protein. https://zhanggroup.org/HPmod/data/Q9ULD8/result.zip. for your case, I think the C-terminal may not be that confident, you can put the C-terminal...

Dear user, You can keep the existing init.xxx if they are not making any trouble. For your restraints, please put it to $datadir, and when you pass the parameters, I think you should just give the restraints name, like osm3_ranked_0_monomer.pdb directly without the path. you can see your issue file ...

Dear user,

You can try https://zhanggroup.org/D-I-TASSER/, and select the IMG and D-I-TASSER-AF2 in the advanced options sections.

Best
IT Team

Dear user,

Please see this viewtopic.php?f=3&t=721&p=1314&hilit=za ... 3bab#p1314

And try to download the zal* in my answer to see if the issue could be solved.

Best
IT Team

Dear user,

You can try our most cutting-edge method https://zhanggroup.org/D-I-TASSER/

Best
IT Team

Dear user,

You can first check if ../ITLIB/PDB/3ee1A1.pdb exists or not by "ls" command,
if this file does not exist, you may want to update/re-download the library to the newest version.

Best
IT Team.

Dear user, We have checked and tested your case. Please see our running output of you case. https://zhanggroup.org/COACH/output/coach_1.zip 1. COACH can only handle single-chain protein as input. While your input is a dimmer, please select either A chain or B chain from your Albumin_predock.pdb (see...

Dear user,

could you zip all your input files and attach them to the forum.

Best
IT Team

Dear user,

I-TASSER simulation may take a long time based on the length of your sequence.
The final file for modeling should be model1.pdb in your folder. You can check the README file in the I-TASSER suite package (but there is no instruction about the number of immediate files).

Best
IT Team

Dear user,

You should add the GO::parser to PERL5LIB (environment variable in your system) if you did not use cpan to manage your Perl module.

Best
IT Team