Search found 22 matches

by XiZhang
Mon Sep 02, 2024 1:57 am
Forum: Main Forum
Topic: IonCom - Missing Probabilities for Predicted Binding Sites
Replies: 1
Views: 1383

Re: IonCom - Missing Probabilities for Predicted Binding Sites

Dear user,

Thank you for using our server. You can find the probabilities for predicted binding sites through https://seq2fun.dcmb.med.umich.edu//Ion ... rob_zn.txt

Best,
Xi
by XiZhang
Fri Aug 30, 2024 3:22 am
Forum: Main Forum
Topic: Quark/C-quark/c-i-tasser job has been running for a month
Replies: 2
Views: 5467

Re: Quark/C-quark/c-i-tasser job has been running for a month

Dear Users, Our computational cluster has been highly occupied over the past few months due to the CASP, which has resulted in some jobs not being completed on time and many others still pending. We apologize for any inconvenience this may have caused. Regarding the C-QUARK job QB3896, it is unfortu...
by XiZhang
Tue Aug 27, 2024 8:36 am
Forum: Main Forum
Topic: I want to cancel/delete my job
Replies: 1
Views: 3817

Re: I want to cancel/delete my job

Dear User,

Our computational cluster was heavily occupied due to the CASP event, which caused delays in processing many jobs. It appears that your job was completed on August 3. I apologize for any inconvenience this may have caused and appreciate your patience in using our server.

Best regards,
Xi
by XiZhang
Wed Jul 10, 2024 2:04 am
Forum: Main Forum
Topic: Unable to submit jobs in C-QUARK
Replies: 2
Views: 5657

Re: Unable to submit jobs in C-QUARK

Dear user,

I have cleaned your previous job. Please try to submit a new one.

Best,
Xi
by XiZhang
Fri Jun 28, 2024 4:08 am
Forum: Main Forum
Topic: STRUM-ITASSER error code local run
Replies: 1
Views: 8527

Re: STRUM-ITASSER error code local run

Dear User,

I apologize for the late reply. It appears that some of the third-party software, such as HHblits, SIFT, and SCWRL, are not set up properly. Could you please verify that these are correctly installed?

Best regards,
Xi
by XiZhang
Fri Jun 28, 2024 3:17 am
Forum: Main Forum
Topic: Results not available from COACH server
Replies: 1
Views: 7755

Re: Results not available from COACH server

Dear User, I apologize for the late reply. I have checked your job, but unfortunately, it is no longer available on our cluster. This may be due to the multiple shutdowns of our cluster in April and May. As an alternative, I have reset your account status, and you can now submit a new job. We apolog...
by XiZhang
Fri Jun 28, 2024 3:00 am
Forum: Main Forum
Topic: COACH job still running after 1 month
Replies: 2
Views: 8636

Re: COACH job still running after 1 month

Dear user, I apologize for the delayed reply. I have checked your job, and the results are now ready to view at https://zhanggroup.org/COACH/output/CH2099417074/. In April and May, we experienced multiple shutdowns of our computational cluster, which likely caused the delay in processing your job. W...
by XiZhang
Fri Jun 28, 2024 2:43 am
Forum: Main Forum
Topic: casres within I-TASSER binary directory
Replies: 2
Views: 6306

Re: casres within I-TASSER binary directory

Dear user,

Basically, casres is a lighter and faster version of cas, which is mainly for structure refinement. If you have more questions, please feel free to contact us.

Best,
Xi
by XiZhang
Fri Jun 28, 2024 2:09 am
Forum: Main Forum
Topic: Protien format
Replies: 1
Views: 5916

Re: Protien format

Dear user,

If you are using the I-TASSER server, you can simply click on "[jobID]_results.tar.bz2" to download your results. After unpacking the tar.bz2 file, you will find PDB structures inside.

Best,
Xi
by XiZhang
Sat May 04, 2024 2:25 am
Forum: Main Forum
Topic: ultiple PDB templates
Replies: 1
Views: 17627

Re: ultiple PDB templates

Dear user,

Thank you for using our web server. Unfortunately, the I-TASSER server can currently only accept one template.

Best regards,
Xi