Search found 19 matches

by XiZhang
Wed Jul 10, 2024 2:04 am
Forum: Main Forum
Topic: Unable to submit jobs in C-QUARK
Replies: 2
Views: 2710

Re: Unable to submit jobs in C-QUARK

Dear user,

I have cleaned your previous job. Please try to submit a new one.

Best,
Xi
by XiZhang
Fri Jun 28, 2024 4:08 am
Forum: Main Forum
Topic: STRUM-ITASSER error code local run
Replies: 1
Views: 6067

Re: STRUM-ITASSER error code local run

Dear User,

I apologize for the late reply. It appears that some of the third-party software, such as HHblits, SIFT, and SCWRL, are not set up properly. Could you please verify that these are correctly installed?

Best regards,
Xi
by XiZhang
Fri Jun 28, 2024 3:17 am
Forum: Main Forum
Topic: Results not available from COACH server
Replies: 1
Views: 5276

Re: Results not available from COACH server

Dear User, I apologize for the late reply. I have checked your job, but unfortunately, it is no longer available on our cluster. This may be due to the multiple shutdowns of our cluster in April and May. As an alternative, I have reset your account status, and you can now submit a new job. We apolog...
by XiZhang
Fri Jun 28, 2024 3:00 am
Forum: Main Forum
Topic: COACH job still running after 1 month
Replies: 1
Views: 6051

Re: COACH job still running after 1 month

Dear user, I apologize for the delayed reply. I have checked your job, and the results are now ready to view at https://zhanggroup.org/COACH/output/CH2099417074/. In April and May, we experienced multiple shutdowns of our computational cluster, which likely caused the delay in processing your job. W...
by XiZhang
Fri Jun 28, 2024 2:43 am
Forum: Main Forum
Topic: casres within I-TASSER binary directory
Replies: 2
Views: 3489

Re: casres within I-TASSER binary directory

Dear user,

Basically, casres is a lighter and faster version of cas, which is mainly for structure refinement. If you have more questions, please feel free to contact us.

Best,
Xi
by XiZhang
Fri Jun 28, 2024 2:09 am
Forum: Main Forum
Topic: Protien format
Replies: 1
Views: 3642

Re: Protien format

Dear user,

If you are using the I-TASSER server, you can simply click on "[jobID]_results.tar.bz2" to download your results. After unpacking the tar.bz2 file, you will find PDB structures inside.

Best,
Xi
by XiZhang
Sat May 04, 2024 2:25 am
Forum: Main Forum
Topic: ultiple PDB templates
Replies: 1
Views: 16724

Re: ultiple PDB templates

Dear user,

Thank you for using our web server. Unfortunately, the I-TASSER server can currently only accept one template.

Best regards,
Xi
by XiZhang
Fri May 03, 2024 3:29 am
Forum: Main Forum
Topic: CR-I-Tasser
Replies: 1
Views: 110293

Re: CR-I-Tasser

Dear user, CR-I-TASSER requires the map resolution to convert the structure to a simulated map, and then calculates the correlation with the background density map. There is a box provided for inputting the resolution. However, if you are unsure about the resolution value, a predictor within the pro...
by XiZhang
Fri May 03, 2024 3:14 am
Forum: Main Forum
Topic: CR-I-Tasser
Replies: 1
Views: 108928

Re: CR-I-Tasser

Dear user, The CR-I-TASSER for modeling multichain structures has not yet been released. You may want to consider submitting jobs for individual chains separately. Regarding the second question, please note that the database for the web server is up to date, whereas the standalone package is not. Th...
by XiZhang
Sun Dec 24, 2023 12:50 pm
Forum: Main Forum
Topic: Results not available from COACH server
Replies: 2
Views: 18940

Re: Results not available from COACH server

Dear user, I have manually reviewed your job, which seems to have encountered a delay, possibly due to a transition issue between the two computational clusters of the server's frontend and backend. I've transited files and resubmitted the job, and am hopeful that we'll get the results as soon as po...