Zhanglab forum

I have manually restarted job CH2099407192. If you still cannot get your result next week, please let us know.

The last job you submitted was
MCF9006 s****@uga.edu 2021-12-05 20:50:01.311277 529 TcINO1
which is more than three months ago. We only retain your data ranging from 1 to 3 months due to limited disk space.

6. The default value of -a is F. Whether or not -a is F, TM-align can return result even if Length(Full_length.pdb)<Length(QUERY1.pdb). Therefore, there is not need for you to set it to a non-default value. 7. No, TM-align will not refuse to report an alignment even if the TM-score is very low, unle...

[1] Pfam is not defined based on tertiary structures. To check if a protein sequence contains a pfam domain, you should use hmmsearch or hmmscan from HMMER to align the sequence and the HMM of the pfam family. TM-align can tell you whether your protein structure model is structurally similar to the ...