Zhanglab forum

Here is an example of an I-Tasser output I am getting. (base) [rpearson@spartan01 IT]$ cat P10636_IT-569564.out Making P10636 directory. mkdir: cannot create directory ‘P10636’: File exists Running P10636 Your setting for running I-TASSER is: -pkgdir = /home/rpearson/Structure_Prediction_Tools/C-I-T...

Here is an example stdout from a C-I-Tasser run: (base) [rpearson@spartan01 CIT]$ cat P41784_CIT-569556.out Making P41784 directory. mkdir: cannot create directory ‘P41784’: File exists Running P41784 Your setting for running I-TASSER is: -pkgdir = /home/rpearson/Structure_Prediction_Tools/C-I-TASSE...

Hello, I have installed C-I-Tasser and I-Tasser on my school's HPC. The installation has been successful with a good number of proteins I have submitted. However, certain proteins are consistently failing to yield any predicted models at all while others only output a single model or 3 models when I...

Hi all, I just wanted to breathe some life into this thread. I am not sure if it is quite resolved yet. Each prediction takes a very long time to run. In fact, my first prediction has been running for almost two days and has not completed. How can I tell if I am using GPU acceleration or not? Best, ...

Hi Wei, I am so sorry for the late reply. I had all but given up on this problem but, sure enough, it is still important to solve for our team. Here is all of the information you have requested. Thanks so much! restriplet.dat 9453 781.0828 70 116 0.992 71 117 0.992 69 115 0.991 72 118 0.991 14 69 0....

The output I got for my C-ITASSER does not match but is close to the webserver's results. Is this okay? What is happening here? Any help would be great!

Hello, I have been able to get 3 model pdb outputs after installing the standalone package. Currently, I am trying to verify that those outputs match the server outputs by submitting the seq.fasta sequence to the C-I-Tasser webserver. Results are still pending and I will report back when I receive t...