Search found 247 matches
- Tue Jan 16, 2024 9:59 am
- Forum: Main Forum
- Topic: Problem with installing DMFoldv1
- Replies: 5
- Views: 7467
Re: Problem with installing DMFoldv1
Dear Shijie, Thank you for using our software, we only test the program on A40, V100, and A100 GPU cards, and never tried RTX4090, so I am not sure I can help with this issue. But have you ever tried this ticket https://zhanggroup.org/forum/viewtopic.php?f=3&t=1010&sid=5e1ad01058db09c1807abd...
- Tue Jan 16, 2024 9:54 am
- Forum: Main Forum
- Topic: Run Run_DeepMSA2.py issue
- Replies: 9
- Views: 13029
Re: Run Run_DeepMSA2.py issue
Dear user,
You can ignore this warning, this is may be you run the program two times, and the first time those links are created, the program should run without a problem when you see this message. Let us know if you have any other trouble.
Best Regards
Wei Zheng
You can ignore this warning, this is may be you run the program two times, and the first time those links are created, the program should run without a problem when you see this message. Let us know if you have any other trouble.
Best Regards
Wei Zheng
- Tue Jan 16, 2024 9:52 am
- Forum: Main Forum
- Topic: No confirmation or reply mail
- Replies: 14
- Views: 80921
Re: No confirmation or reply mail
Hi Zijian,
Yes, please change to another email address, some emails seem to have issues with receiving our notification email, we think it is an issue from your email server side, and can not be solved by our side. Thank you.
Best Regards
Wei Zheng
Yes, please change to another email address, some emails seem to have issues with receiving our notification email, we think it is an issue from your email server side, and can not be solved by our side. Thank you.
Best Regards
Wei Zheng
- Sun Jan 14, 2024 8:36 am
- Forum: Main Forum
- Topic: No confirmation or reply mail
- Replies: 14
- Views: 80921
Re: No confirmation or reply mail
Dear Zijian,
We have sent the jobs to your email. and maybe next time you should change another email. Thank you.
Best Regards
Wei Zheng
We have sent the jobs to your email. and maybe next time you should change another email. Thank you.
Best Regards
Wei Zheng
- Sat Jan 13, 2024 4:18 am
- Forum: Main Forum
- Topic: No confirmation or reply mail
- Replies: 14
- Views: 80921
Re: No confirmation or reply mail
Dear Zijian,
We didn't find you have jobs running on DMFold, you can test submit your job again.
BTW, try to clean your input sequence, despite we have implemented the non-ascii code dealing function, we suggest only containing the 'English word' in your input information.
Best Regards
Wei Zheng
We didn't find you have jobs running on DMFold, you can test submit your job again.
BTW, try to clean your input sequence, despite we have implemented the non-ascii code dealing function, we suggest only containing the 'English word' in your input information.
Best Regards
Wei Zheng
- Fri Jan 12, 2024 5:27 am
- Forum: Main Forum
- Topic: Issue Encountered While Setting Up DMFold
- Replies: 13
- Views: 13721
Re: Issue Encountered While Setting Up DMFold
Hi Xin-Dong,
Yes, sometimes the amber refinement has an issue with GPU, you can either use CPU to do refinement (it still has some change failed) or cancel it and use other tools to remove clash (if exists).
Glad to see you solve the problems.
Best
Wei
Yes, sometimes the amber refinement has an issue with GPU, you can either use CPU to do refinement (it still has some change failed) or cancel it and use other tools to remove clash (if exists).
Glad to see you solve the problems.
Best
Wei
- Thu Jan 11, 2024 8:12 am
- Forum: Main Forum
- Topic: Issue Encountered While Setting Up DMFold
- Replies: 13
- Views: 13721
Re: Issue Encountered While Setting Up DMFold
Hi Xin-Dong Based on the message I guess it may be the issue from Google Jax, You can try a different version Jax, if you used CUDA11, maybe pip install absl-py==0.13.0 biopython==1.79 chex==0.0.7 dm-haiku==0.0.4 dm-tree==0.1.6 immutabledict==2.0.0 jax==0.2.14 ml-collections==0.1.0 numpy==1.20.1 sci...
- Wed Jan 10, 2024 1:37 pm
- Forum: Main Forum
- Topic: Issue Encountered While Setting Up DMFold
- Replies: 13
- Views: 13721
Re: Issue Encountered While Setting Up DMFold
Dear Xin-Dong Xu, Thank you for using our software. First, you can ignore the 'Warning message, it is not the error'. Second, please make sure that you correctly run the ./Install_af2_env.sh command and the AlphaFold2 package is successfully installed in your cluster. You can try $DMFold_dir/bin/alp...
- Tue Jan 09, 2024 5:32 am
- Forum: Main Forum
- Topic: DeepMSA2 from China and server errors
- Replies: 5
- Views: 49180
Re: DeepMSA2 from China and server errors
Dear Wenlong, What email did you use? Gmail? Gmail sometimes has issues getting our server email which may be due to Google email server issue for an unknown reason. I would suggest you change to another email next time. Let me know your email used for submitting, I will forward the job ID by person...
- Mon Jan 08, 2024 9:41 am
- Forum: Main Forum
- Topic: DeepMSA2 from China and server errors
- Replies: 5
- Views: 49180
Re: DeepMSA2 from China and server errors
Dear Wenlong,
We have fixed the issue, and now you can submit it.
Best Regards
Wei Zheng
We have fixed the issue, and now you can submit it.
Best Regards
Wei Zheng