Search found 247 matches
- Sat Jan 06, 2024 12:20 am
- Forum: Main Forum
- Topic: Compressed data of DeepMSA2 Database is corrupt
- Replies: 2
- Views: 42879
Re: Compressed data of DeepMSA2 Database is corrupt
Dear user, Thank you for reporting this issue, we have fixed the data source, and now you can re-download those two files by wget -c https://zhanggroup.org/ftp/data/JGIclust30/DB.fasta.ac.xz wget -c https://zhanggroup.org/ftp/data/JGIclust30/DB.fasta.ab.ssi.xz Let us know if you find any other issue...
- Fri Jan 05, 2024 10:31 am
- Forum: Main Forum
- Topic: No confirmation or reply mail
- Replies: 14
- Views: 80601
Re: No confirmation or reply mail
We have sent a personal email to meriemelfessikh@gmail.com with all your job ids
- Fri Jan 05, 2024 10:19 am
- Forum: Main Forum
- Topic: No confirmation or reply mail
- Replies: 14
- Views: 80601
Re: No confirmation or reply mail
Dear user,
Have you tried this link using your email?
https://zhanggroup.org/LOMETS/check.html
Best
IT Team
Have you tried this link using your email?
https://zhanggroup.org/LOMETS/check.html
Best
IT Team
- Fri Jan 05, 2024 9:56 am
- Forum: Main Forum
- Topic: No confirmation or reply mail
- Replies: 14
- Views: 80601
Re: No confirmation or reply mail
what email address you have used?
- Fri Jan 05, 2024 9:54 am
- Forum: Main Forum
- Topic: Can I submit customed alignment for protein structure prediction?
- Replies: 1
- Views: 40794
Re: Can I submit customed alignment for protein structure prediction?
Dear user,
D-I-TASSER server using our huge metagenome sequence databases which can detect more homologous sequences than the usual MSA pipeline. So we didn't implement the customs MSA as input. We will consider it in the future.
Thank you.
Best Regards
IT Team
D-I-TASSER server using our huge metagenome sequence databases which can detect more homologous sequences than the usual MSA pipeline. So we didn't implement the customs MSA as input. We will consider it in the future.
Thank you.
Best Regards
IT Team
- Fri Dec 15, 2023 8:34 pm
- Forum: Main Forum
- Topic: FG-MD & EvoDesign Servers
- Replies: 5
- Views: 54743
Re: FG-MD & EvoDesign Servers
Dear user,
Could you let us know your job ids?
Best
IT Team
Could you let us know your job ids?
Best
IT Team
- Sun Dec 10, 2023 12:58 am
- Forum: Main Forum
- Topic: Unzip the "result.tar.bz2" file from CoFactor
- Replies: 6
- Views: 42320
Re: Unzip the "result.tar.bz2" file from CoFactor
Dear user, We have download your results *.bz2 from https://zhanggroup.org/COFACTOR/output/MCF12412/ and https://zhanggroup.org/COFACTOR/output/MCF12405/. It seems no problem when we uncompress the data. Please see if your compress/uncompress software has any issues dealing with the bz2 file. Thank ...
- Sat Dec 09, 2023 7:46 pm
- Forum: Main Forum
- Topic: Unzip the "result.tar.bz2" file from CoFactor
- Replies: 6
- Views: 42320
Re: Unzip the "result.tar.bz2" file from CoFactor
Dear user,
Please let us know your job id, so that we can check the original bz2 file.
Best
IT Team
Please let us know your job id, so that we can check the original bz2 file.
Best
IT Team
- Tue Dec 05, 2023 8:21 pm
- Forum: Main Forum
- Topic: Inquiry Regarding Interpretation of Output Graphs from i_Tasser Deep Neural Network
- Replies: 1
- Views: 29220
Re: Inquiry Regarding Interpretation of Output Graphs from i_Tasser Deep Neural Network
Hi Daim, Thank you for using our software, D-I-TASSER. The figures you asked for are a contact map, distance map, and hydrogen binding network that is used to guide the D-I-TASSER folding simulation (structure prediction). Those spatial restraints are predicted by DeepPotential, AttentionPotential, ...
- Wed Nov 01, 2023 4:09 pm
- Forum: Main Forum
- Topic: Options for uploading a longer sequence to D-I-TASSER?
- Replies: 1
- Views: 41042
Re: Options for uploading a longer sequence to D-I-TASSER?
Dear user, Due to the resource limitation, we limited the sequence to 750AA current. Please find our pre-build model by D-I-TASSER for your target protein. https://zhanggroup.org/HPmod/data/Q9ULD8/result.zip. for your case, I think the C-terminal may not be that confident, you can put the C-terminal...