Zhanglab forum

We do not have programs to predict DNA structure. Sorry.

Unfortunately, your job was not correctly parsed by our server due to internal bug. I have already resubmitted your protein as job T11532. If you did not receive result by next week, please let us know.

This is an issue related to the EMrefinement.pl script of I-TASSER. Could you send us the closc*pdb, combo*pdb and model*pdb files of your job as a zip file? We can further check what the issue is.

I-TASSER does not explicitly consider ligand, just like almost any protein structure prediction program. Therefore, the predicted structure are usually the apo (i.e., ligand-free) conformation of the protein.

Your EDock job is now fixed. There will be no xscore as it cannot parse the FE atom. Nonetheless, you should be able to get the docking pose.

This is just a warning from the contact predictor used by FUpred. It uses JIT compiler from numba. Without numba, the program will still run correctly, albeit slower.

The second round of simulation is performed by I-TASSERmod/EMrefinement.pl which is called by line 1915 of I-TASSERmod/runI-TASSER.pl

The online web server contains some component that we unfortunately cannot redistribute with the standalone package due to license issue. For example, the template identification by LOMETS uses HHsearch, which is only used by web server but not standalone package. In most cases, this does not have a...

According to our system record, job S680633 is already deleted by the user. Please also note that the estimated queue time is only a very rough approximation. It is very possible that some proteins would take longer than expected, e.g. due to heavy load of the supercomputer cluster. In your case, yo...

Your jobs should have been completed a few days ago at https://zhanggroup.org/I-TASSER/output/S679460/