Zhanglab forum

Thank you! As I know, our program curreenly does not support GNU parallel. In our computer cluster, we use SLURM Workload Manager (https://slurm.schedmd.com) for parallel jobs processing.

Here is the result.

Sorry, there may be a problem with the script for result page generation. I just confirmed that your job was actually complete. But I don't know how to send the result to you.

Our FTP server is not working now which results in the problem of database downloading. You can change the line 102 in "download_lib.pl" to " system("wget -o log -c http://zhanglab.ccmb.med.umich.edu/library/nr.tar.gz") == 0 or die "System call failed: $!"; "....

I think this is normal because the predicted secondary structure is not completely correct. The simulation will correct some unreasonable regions according to the template information and the energy, which reults in the secondary structure in the final model is different from the predicted one.

As I know, the I-TASSER suite is suitable for only Linux OS.

Yes, you can use FASPR (https://zhanglab.dcmb.med.umich.edu/FASPR/) to quickly generate the side-chain of each protein chain independently.