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US-align vs TM-align for antibody alignment

Last post by zcx@umich.edu « Sat Jul 27, 2024 11:53 am
Replies: 1
by scriblerus » Wed Jul 24, 2024 4:33 pm

1 Replies

59874 Views

Last post by zcx@umich.edu
Sat Jul 27, 2024 11:53 am
Calculation of TM-score and rmsd for all predicted models by I-TASSER

Last post by FYaghoobizadeh « Tue Jul 23, 2024 4:00 pm

by FYaghoobizadeh » Tue Jul 23, 2024 4:00 pm

0 Replies

70052 Views

Last post by FYaghoobizadeh
Tue Jul 23, 2024 4:00 pm
EDTSurf: hydration shell between SAS and SES

Last post by zbiao « Fri Jul 12, 2024 7:41 am
Replies: 1
by johnnytam100 » Wed Jul 10, 2024 1:50 am

1 Replies

17482 Views

Last post by zbiao
Fri Jul 12, 2024 7:41 am
Unable to submit jobs in C-QUARK

Last post by Anu1 « Wed Jul 10, 2024 3:12 pm
Replies: 2
by Anu1 » Mon Jul 08, 2024 10:11 am

2 Replies

16181 Views

Last post by Anu1
Wed Jul 10, 2024 3:12 pm
How to compare multiple protein structures with TM-align

Last post by zcx@umich.edu « Tue Jul 09, 2024 6:49 pm
Replies: 1
by xubai » Mon Jul 08, 2024 8:32 am

1 Replies

59307 Views

Last post by zcx@umich.edu
Tue Jul 09, 2024 6:49 pm
STRUM-ITASSER error code local run

Last post by XiZhang « Fri Jun 28, 2024 4:08 am
Replies: 1
by linfo » Mon May 06, 2024 5:43 am

1 Replies

14447 Views

Last post by XiZhang
Fri Jun 28, 2024 4:08 am
USalign RMSD

Last post by zcx@umich.edu « Thu Jun 27, 2024 11:17 am
Replies: 1
by fsin » Mon Jun 10, 2024 3:34 am

1 Replies

56183 Views

Last post by zcx@umich.edu
Thu Jun 27, 2024 11:17 am
Unreadable protein pdb file

Last post by hujun « Thu Jun 27, 2024 1:27 am
Replies: 1
by Sanskritishrivastava » Sat Jun 22, 2024 5:28 am

1 Replies

17668 Views

Last post by hujun
Thu Jun 27, 2024 1:27 am
EvoDesign - Help

Last post by Srd24 « Mon Jun 24, 2024 7:36 pm

by Srd24 » Mon Jun 24, 2024 7:36 pm

0 Replies

26946 Views

Last post by Srd24
Mon Jun 24, 2024 7:36 pm
Polysaccharide/Peptides

Last post by sophiamartin2342 « Fri Jun 21, 2024 2:41 am
Replies: 2
by Sami » Wed Oct 06, 2021 6:39 pm

2 Replies

12116 Views

Last post by sophiamartin2342
Fri Jun 21, 2024 2:41 am
How to add latest structure file to database when useing DMFold

Last post by DSJ « Mon Jun 03, 2024 9:36 am

by DSJ » Mon Jun 03, 2024 9:36 am

0 Replies

30175 Views

Last post by DSJ
Mon Jun 03, 2024 9:36 am
DMFold

Last post by wangzhibo321 « Wed May 08, 2024 4:35 am
Replies: 2
by wangzhibo321 » Sun May 05, 2024 5:33 am

2 Replies

94418 Views

Last post by wangzhibo321
Wed May 08, 2024 4:35 am
Restricting TM-align to a given superposition

Last post by kamurani « Mon May 06, 2024 4:08 am
Replies: 4
by kamurani » Wed Apr 03, 2024 1:29 am

4 Replies

217509 Views

Last post by kamurani
Mon May 06, 2024 4:08 am
ultiple PDB templates

Last post by XiZhang « Sat May 04, 2024 2:25 am
Replies: 1
by 238527177@fzu.edu.cn » Thu Apr 18, 2024 3:14 am

1 Replies

29958 Views

Last post by XiZhang
Sat May 04, 2024 2:25 am
Need help for running complex

Last post by jlspzw « Fri May 03, 2024 8:29 pm
Replies: 3
by ljt20242024 » Thu Apr 25, 2024 1:32 pm

3 Replies

132445 Views

Last post by jlspzw
Fri May 03, 2024 8:29 pm
Biolip: pocket - chain relationship

Last post by yaron « Fri May 03, 2024 5:41 am
Replies: 2
by yaron » Sun Mar 03, 2024 11:54 am

2 Replies

114059 Views

Last post by yaron
Fri May 03, 2024 5:41 am
CR-I-Tasser

Last post by XiZhang « Fri May 03, 2024 3:14 am
Replies: 1
by mforoozm » Sun Apr 07, 2024 5:30 am

1 Replies

115343 Views

Last post by XiZhang
Fri May 03, 2024 3:14 am
Alignment based on pLDDT

Last post by zcx@umich.edu « Thu May 02, 2024 7:11 pm
Replies: 1
by antonia.feilden » Mon Mar 18, 2024 4:56 pm

1 Replies

163298 Views

Last post by zcx@umich.edu
Thu May 02, 2024 7:11 pm
DMFold

Last post by jlspzw « Tue Apr 30, 2024 6:03 am
Replies: 1
by edithfore » Mon Apr 29, 2024 2:45 pm

1 Replies

81774 Views

Last post by jlspzw
Tue Apr 30, 2024 6:03 am
EDTSurf:EDTSurf program is not generating the XX.dep output files as expected

Last post by zbiao « Tue Apr 30, 2024 5:59 am
Replies: 3
by zbiao » Sun Apr 28, 2024 11:32 am

3 Replies

40183 Views

Last post by zbiao
Tue Apr 30, 2024 5:59 am
Homologous dimer modeling

Last post by 238527177@fzu.edu.cn « Thu Apr 18, 2024 12:52 am
Replies: 2
by 238527177@fzu.edu.cn » Wed Apr 17, 2024 12:36 pm

2 Replies

95742 Views

Last post by 238527177@fzu.edu.cn
Thu Apr 18, 2024 12:52 am
US Align - superimposition of all proteins

Last post by zcx@umich.edu « Tue Apr 16, 2024 8:13 am
Replies: 3
by antonia.feilden » Wed Feb 21, 2024 10:16 am

3 Replies

122454 Views

Last post by zcx@umich.edu
Tue Apr 16, 2024 8:13 am
DMFold Run_DeepMSA2.py error

Last post by jlspzw « Mon Apr 15, 2024 1:12 pm
Replies: 3
by kehan777 » Fri Apr 05, 2024 9:18 am

3 Replies

213248 Views

Last post by jlspzw
Mon Apr 15, 2024 1:12 pm
DeepMSA2 and DMFold questions about DeepMSA2_noIMG.py

Last post by jlspzw « Fri Apr 12, 2024 3:57 pm
Replies: 1
by make110980006 » Thu Apr 11, 2024 9:19 am

1 Replies

125374 Views

Last post by jlspzw
Fri Apr 12, 2024 3:57 pm
i-TASSER Ab initio FM

Last post by jlspzw « Wed Apr 03, 2024 12:41 pm
Replies: 1
by benguyaren » Tue Apr 02, 2024 8:31 am

1 Replies

143906 Views

Last post by jlspzw
Wed Apr 03, 2024 12:41 pm
Concerns Regarding Delays with DMFold Protein-Protein Interaction Prediction Server

Last post by dongxiaojie « Sun Mar 31, 2024 2:51 am
Replies: 4
by dongxiaojie » Sat Mar 30, 2024 1:41 pm

4 Replies

153504 Views

Last post by dongxiaojie
Sun Mar 31, 2024 2:51 am
dont get results from DeepMSA2

Last post by jlspzw « Wed Mar 27, 2024 8:27 am
Replies: 1
by junjie86 » Tue Mar 26, 2024 2:39 am

1 Replies

65615 Views

Last post by jlspzw
Wed Mar 27, 2024 8:27 am
runtime error in DeepMSA 2.1

Last post by jlspzw « Wed Mar 27, 2024 8:11 am
Replies: 1
by yang wan » Tue Mar 26, 2024 11:08 am

1 Replies

65558 Views

Last post by jlspzw
Wed Mar 27, 2024 8:11 am
TM-align: web port + matrix-based superimposition

Last post by mauro « Wed Mar 27, 2024 5:18 am
Replies: 1
by mauro » Wed Mar 27, 2024 4:08 am

1 Replies

59195 Views

Last post by mauro
Wed Mar 27, 2024 5:18 am
what do output colors indicate

Last post by jlspzw « Sun Mar 24, 2024 3:30 am
Replies: 3
by maria » Fri Mar 22, 2024 3:08 pm

3 Replies

70990 Views

Last post by jlspzw
Sun Mar 24, 2024 3:30 am
There may be a code error in DMFold's MSA_combination.py

Last post by jlspzw « Fri Mar 22, 2024 4:48 pm
Replies: 1
by Gary » Fri Mar 22, 2024 3:11 am

1 Replies

64632 Views

Last post by jlspzw
Fri Mar 22, 2024 4:48 pm
DeepMSA2 running issue

Last post by jlspzw « Fri Mar 22, 2024 4:20 pm
Replies: 2
by junjie86 » Wed Mar 20, 2024 1:16 am

2 Replies

66738 Views

Last post by jlspzw
Fri Mar 22, 2024 4:20 pm
not getting email from DMFold

Last post by jlspzw « Wed Mar 20, 2024 1:51 am
Replies: 3
by wzyin » Mon Mar 18, 2024 12:46 pm

3 Replies

63132 Views

Last post by jlspzw
Wed Mar 20, 2024 1:51 am
i tasser results not received

Last post by jlspzw « Fri Mar 15, 2024 2:55 am
Replies: 1
by srl353 » Thu Mar 07, 2024 7:11 am

1 Replies

58127 Views

Last post by jlspzw
Fri Mar 15, 2024 2:55 am
Different Structures for the same sequence

Last post by jlspzw « Fri Mar 15, 2024 2:42 am
Replies: 3
by Siematigi » Tue Mar 12, 2024 10:53 am

3 Replies

60922 Views

Last post by jlspzw
Fri Mar 15, 2024 2:42 am
Job confirmation email not received for C-I-TASSER, C-QUARK & Deepfold

Last post by jlspzw « Fri Mar 15, 2024 2:37 am
Replies: 3
by Anu1 » Wed Mar 13, 2024 10:55 am

3 Replies

65232 Views

Last post by jlspzw
Fri Mar 15, 2024 2:37 am
Edock results

Last post by rab2 « Tue Mar 12, 2024 3:52 pm

by rab2 » Tue Mar 12, 2024 3:52 pm

0 Replies

116459 Views

Last post by rab2
Tue Mar 12, 2024 3:52 pm
DRFold Running job

Last post by guillem_ares « Tue Mar 05, 2024 9:23 am

by guillem_ares » Tue Mar 05, 2024 9:23 am

0 Replies

80854 Views

Last post by guillem_ares
Tue Mar 05, 2024 9:23 am
TM-align results

Last post by jc3398@cornell.edu « Thu Feb 29, 2024 11:02 pm
Replies: 3
by jc3398@cornell.edu » Wed Feb 28, 2024 11:02 pm

3 Replies

18646 Views

Last post by jc3398@cornell.edu
Thu Feb 29, 2024 11:02 pm
Questions about the new version of DMFold

Last post by jlspzw « Wed Feb 28, 2024 12:40 pm
Replies: 1
by Gary » Wed Feb 28, 2024 2:25 am

1 Replies

16491 Views

Last post by jlspzw
Wed Feb 28, 2024 12:40 pm

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