Can I submit customed alignment for protein structure prediction?

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Huang Huang
Posts: 1
Joined: Wed Jan 03, 2024 8:29 am

Can I submit customed alignment for protein structure prediction?

Post by Huang Huang »

Hi,
The protein I submitted don't have any homologs in any database. But i have some of the homologous sequence, so I want to know whether can I submit a alignment for structure prediction by D-I-TASSER.
Sincercely
jlspzw
Posts: 247
Joined: Tue May 04, 2021 5:04 pm

Re: Can I submit customed alignment for protein structure prediction?

Post by jlspzw »

Dear user,

D-I-TASSER server using our huge metagenome sequence databases which can detect more homologous sequences than the usual MSA pipeline. So we didn't implement the customs MSA as input. We will consider it in the future.

Thank you.

Best Regards
IT Team
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