I-TASSER standalone suite installation

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righteousagoha
Posts: 4
Joined: Mon Feb 19, 2024 2:09 am

I-TASSER standalone suite installation

Post by righteousagoha »

Hello,

I have been trying to install I-TASSER but after following the directions, I always hit a wall, regardless of the version. Below are the codes and system feedback.
(base) righteousagoha@DESKTOP-EQ55Q8H:~/I-TASSER5.1$ perl download_lib.pl -libdir /mnt/c/wsl.localhost/Ubuntu/home/righteousagoha/ITLIB -P true -B true -N true

The I-TASSER library files to be downloaded include:
--------------------------------------------
Name Size Size
(compressed) (decompressed)
--------------------------------------------
nr 4.10 GB 7.30 GB
PDB 2.05 GB 4.40 GB
MTX 0.72 GB 1.80 GB
DEP 0.43 GB 2.80 GB
SIG 0.46 GB 1.90 GB
CNT 0.18 GB 0.87 GB
dotProfiles 0.24 GB 0.85 GB
Bfactor 0.15 GB 0.95 GB
summary 0.22 GB 2.60 GB
TM-SITE 1.23 GB 1.30 GB
S-SITE 0.41 GB 2.70 GB
COFACTOR 2.61 GB 16.10 GB
others 1.00 GB 6.50 GB

TOTAL ~11.00 GB ~50.00 GB
--------------------------------------------

Your settings for the I-TASSER library are:

-libdir = /mnt/c/wsl.localhost/Ubuntu/home/righteousagoha/ITLIB
-P = true
-B = true
-N = true

Downloading NR database...
System call failed: at download_lib.pl line 102.

Regards,
Righteous
jlspzw
Posts: 245
Joined: Tue May 04, 2021 5:04 pm

Re: I-TASSER standalone suite installation

Post by jlspzw »

Dear user,

could you post your download_lib.pl as an attached file?

Thank you.

Best Regards
Wei Zheng
righteousagoha
Posts: 4
Joined: Mon Feb 19, 2024 2:09 am

Re: I-TASSER standalone suite installation

Post by righteousagoha »

Hello Wei Zheng,

Below is a link to the download_lib.pl. I am not so familiar with the forum, hence I could not upload it as an attached file. https://1drv.ms/u/s!AhWjCWRY4Zx_oh-T9UD ... z?e=ficack.

Thank you.

Regards,
Righteous Kwaku Agoha.
jlspzw
Posts: 245
Joined: Tue May 04, 2021 5:04 pm

Re: I-TASSER standalone suite installation

Post by jlspzw »

Hi Righteous,

Please change the line 102 in the download_lib.pl, the link from ftp://zhanglab.ccmb.med.umich.edu/download/nr.tar.gz to ftp://zhanglab.ccmb.med.umich.edu/library/nr.tar.gz , see if the new one works.

Best Regards
Wei Zheng
righteousagoha
Posts: 4
Joined: Mon Feb 19, 2024 2:09 am

Re: I-TASSER standalone suite installation

Post by righteousagoha »

jlspzw wrote: Mon Feb 19, 2024 6:23 pm Hi Righteous,

Please change the line 102 in the download_lib.pl, the link from ftp://zhanglab.ccmb.med.umich.edu/download/nr.tar.gz to ftp://zhanglab.ccmb.med.umich.edu/library/nr.tar.gz , see if the new one works.

Best Regards
Wei Zheng

Even after changing the line in 102, I am still getting the same responds,
(base) righteousagoha@DESKTOP-EQ55Q8H:~/I-TASSER5.1$ perl download_lib.pl -libdir /mnt/c/wsl.localhost/Ubuntu/home/righteousagoha/ITLIB -P true -B true -N true

The I-TASSER library files to be downloaded include:
--------------------------------------------
Name Size Size
(compressed) (decompressed)
--------------------------------------------
nr 4.10 GB 7.30 GB
PDB 2.05 GB 4.40 GB
MTX 0.72 GB 1.80 GB
DEP 0.43 GB 2.80 GB
SIG 0.46 GB 1.90 GB
CNT 0.18 GB 0.87 GB
dotProfiles 0.24 GB 0.85 GB
Bfactor 0.15 GB 0.95 GB
summary 0.22 GB 2.60 GB
TM-SITE 1.23 GB 1.30 GB
S-SITE 0.41 GB 2.70 GB
COFACTOR 2.61 GB 16.10 GB
others 1.00 GB 6.50 GB

TOTAL ~11.00 GB ~50.00 GB
--------------------------------------------

Your settings for the I-TASSER library are:

-libdir = /mnt/c/wsl.localhost/Ubuntu/home/righteousagoha/ITLIB
-P = true
-B = true
-N = true

Downloading NR database...
System call failed: at download_lib.pl line 102.
jlspzw
Posts: 245
Joined: Tue May 04, 2021 5:04 pm

Re: I-TASSER standalone suite installation

Post by jlspzw »

Dear Righteous,

How about this one https://zhanggroup.org/library/nr.tar.gz

Best Regards
Wei Zheng
righteousagoha
Posts: 4
Joined: Mon Feb 19, 2024 2:09 am

Re: I-TASSER standalone suite installation

Post by righteousagoha »

Dear Wei Zheng,

I must say that I am still having the same error at line 102. Can I get a link to manually download the NR database, so that I can move it to ITLIB and continue with the rest of the automatic download of the dependencies?
Thank you.

Regards,
Righteous Kwaku Agoha

(base) righteousagoha@DESKTOP-EQ55Q8H:~/I-TASSER5.1$ perl download_lib.pl -libdir /mnt/c/wsl.localhost/Ubuntu/home/righteousagoha/ITLIB -P true -B true -N true

The I-TASSER library files to be downloaded include:
--------------------------------------------
Name Size Size
(compressed) (decompressed)
--------------------------------------------
nr 4.10 GB 7.30 GB
PDB 2.05 GB 4.40 GB
MTX 0.72 GB 1.80 GB
DEP 0.43 GB 2.80 GB
SIG 0.46 GB 1.90 GB
CNT 0.18 GB 0.87 GB
dotProfiles 0.24 GB 0.85 GB
Bfactor 0.15 GB 0.95 GB
summary 0.22 GB 2.60 GB
TM-SITE 1.23 GB 1.30 GB
S-SITE 0.41 GB 2.70 GB
COFACTOR 2.61 GB 16.10 GB
others 1.00 GB 6.50 GB

TOTAL ~11.00 GB ~50.00 GB
--------------------------------------------

Your settings for the I-TASSER library are:

-libdir = /mnt/c/wsl.localhost/Ubuntu/home/righteousagoha/ITLIB
-P = true
-B = true
-N = true

Downloading NR database...
System call failed: at download_lib.pl line 102.
jlspzw
Posts: 245
Joined: Tue May 04, 2021 5:04 pm

Re: I-TASSER standalone suite installation

Post by jlspzw »

Dear Righteous,

This is the available link https://zhanggroup.org/library/nr.tar.gz you can manually click and download.

Best Regrads
Wei Zheng
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