How to obtain protein complex pdb with DMFold?

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Gary
Posts: 3
Joined: Sat Feb 24, 2024 5:59 am

How to obtain protein complex pdb with DMFold?

Post by Gary »

Hello, I follow the steps in DeepMSA2-multimer, and after Step 3: MSA_combination.py, I get the ranking of protein complex MSA, and each ranking contains 3 types of MSA: paired.aln, full_paired.aln, full_paired_pad.aln, how do I get the pdb prediction after I have these data?
Is it possible to add a step4 in readme?
jlspzw
Posts: 247
Joined: Tue May 04, 2021 5:04 pm

Re: How to obtain protein complex pdb with DMFold?

Post by jlspzw »

Dear user,

If you want to get the complex structure, please download the DMFold package instead of DeepMSA2.

https://zhanggroup.org/DMFold/

Best Regards
Wei Zheng
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