Alignment based on pLDDT

[antonia.feilden]

To whom it may concern,

I have read: viewtopic.php?f=3&t=652&p=1220&hilit=pl ... fe7c#p1220

Does US-Align take into account pLDDT and BAT scores for AlphaFold and PDB crystal structures? Both are residue location confidence metrics. I believe this could enhance the tool and be implemented using the summation of relative weights of the aligned residues.

Best wishes,
Antonia

[zcx@umich.edu]

No, US-align cannot consider pLDDT score.