Library Download Failure

This forum is shown on the index page along with all topics.

Moderator: robpearc

Glinttsd
Posts: 1
Joined: Thu Jun 10, 2021 6:14 am

Library Download Failure

Post by Glinttsd »

In oder to get COACH running, we were trying to download the template library (C-I-TASSER-1.0).
But the download process (via download_lib.pl file) was terminated and it said : System call failed: at ./download_lib.pl line 108..
We assume that the problem lies in the network connection from the server by checking download_lib.pl file.
xiaogenz
Posts: 70
Joined: Sun Apr 25, 2021 12:02 am

Re: Library Download Failure

Post by xiaogenz »

You can change the line 102 in "download_lib.pl" to " system("wget -o log -c http://zhanglab.dcmb.med.umich.edu/library/nr.tar.gz") == 0 or die "System call failed: $!"; ". It will be working after the modification.
fatin_izz
Posts: 4
Joined: Fri Jun 11, 2021 4:44 am

Re: Library Download Failure

Post by fatin_izz »

hi, I think I have the same problem but on different line when runnning the download_lib.pl script. It shows:
"Can't exec "wget": No such file or directory at ./download_lib.pl line 214.
System call failed: No such file or directory at ./download_lib.pl line 214.".

line 214: "system("wget -o log https://zhanglab.ccmb.med.umich.edu/library/") == 0 or die "System call failed: $!";"
xiaogenz
Posts: 70
Joined: Sun Apr 25, 2021 12:02 am

Re: Library Download Failure

Post by xiaogenz »

Please use the new script wich can be downloaded from https://zhanglab.dcmb.med.umich.edu/Bio ... lib_new.pl
Post Reply