output_interpreting
Posted: Sun Aug 29, 2021 6:46 am
Hi,
Recently i have submitted one protein sequence (S639738) and get the result from I-TASSER server. But i am very novice to interpret the result. As for this i have some questions:
1. What does it mean by solvent accessibility value? Does it mean near to 9 is more accessible to solvents? And if it likes so, is there any relation to solvent accessible site and ligand binding site?
2.In model figure how to mark the binding sites?
3.Acording to C-score of ligand binding sites, can i say someting like that "site 42(E) and 46(N) are candidate for Mg2+ binding?
Here, i am adding the link of my job: https://zhanglab.dcmb.med.umich.edu/I-T ... t/S639738/
Looking for your cooperation. Thanks.
Recently i have submitted one protein sequence (S639738) and get the result from I-TASSER server. But i am very novice to interpret the result. As for this i have some questions:
1. What does it mean by solvent accessibility value? Does it mean near to 9 is more accessible to solvents? And if it likes so, is there any relation to solvent accessible site and ligand binding site?
2.In model figure how to mark the binding sites?
3.Acording to C-score of ligand binding sites, can i say someting like that "site 42(E) and 46(N) are candidate for Mg2+ binding?
Here, i am adding the link of my job: https://zhanglab.dcmb.med.umich.edu/I-T ... t/S639738/
Looking for your cooperation. Thanks.