runCOACH.pl error

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Irin Sultana
Posts: 5
Joined: Sat Aug 28, 2021 4:05 pm

runCOACH.pl error

Post by Irin Sultana »

Hi,
I am trying to use the standalone version in my local coputer. I had a issue with runCOACH.pl. Initially it was unable to find GO::parser. Then i download the GO::parser by my own and inatalled it. Later i rerun the "runCOACH.pl" separately. And i found follwing error:

CMDline:
/mnt/genome3/Lab_Users/Kishor/DISK_2/softwares/I-TASSER5.1/I-TASSERmod/runCOACH.pl -pkgdir /mnt/genome3/Lab_Users/Kishor/DISK_2/softwares/I-TASSER5.1 -libdir /mnt/genome3/Lab_Users/Kishor/DISK_2/softwares/I-TASSER5.1/ITLIB -runstyle serial -protname example -model model1.pdb -datadir /mnt/genome3/Lab_Users/Kishor/DISK_2/softwares/I-TASSER5.1/example -homoflag real -idcut 1 -LBS true -EC true -GO true

Printed Text:
Your setting for running COACH is:
-pkgdir = /mnt/genome3/Lab_Users/Kishor/DISK_2/softwares/I-TASSER5.1
-libdir = /mnt/genome3/Lab_Users/Kishor/DISK_2/softwares/I-TASSER5.1/ITLIB
-protname = example
-datadir = /mnt/genome3/Lab_Users/Kishor/DISK_2/softwares/I-TASSER5.1/example
-outdir = /mnt/genome3/Lab_Users/Kishor/DISK_2/softwares/I-TASSER5.1/example
-homoflag = real
-idcut = 1
-runstyle = serial
-LBS = true
-EC = true
-GO = true

run /mnt/genome3/Lab_Users/Kishor/DISK_2/softwares/I-TASSER5.1/example/model1/coach/CH_example_model1.pl...
Can't locate GO/Parser.pm in @INC (@INC contains: /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at /mnt/genome3/Lab_Users/Kishor/DISK_2/softwares/I-TASSER5.1/example/model1/cofactor/CF_example_model1.pl line 3.
BEGIN failed--compilation aborted at /mnt/genome3/Lab_Users/Kishor/DISK_2/softwares/I-TASSER5.1/example/model1/cofactor/CF_example_model1.pl line 3.
Hostname: localhost.localdomain
Started : Fri Sep 3 21:38:55 CST 2021

Path : /mnt/genome3/Lab_Users/Kishor/DISK_2/softwares/I-TASSER5.1/example
=============== COFACTOR starts ================
run CF_example_model1...

=============== COFACTOR ends ==================
TM-SITE has been done, skip running

S-SITE has been done, skip running
COFACTOR LBS prediction fails
COACH exit, pleach check
COACH done

So, it means
1: It could not locate GO:parser module.
2. COFactor prediction failed.

Here, i am also adding the module path your consideration:
GO::Parser folder:
/usr/local/lib64/perl5/
Parser.pm containing folder:
/usr/local/lib64/perl5/go-perl-0.15/GO



Can any one give me the suggestion to handle the situation? Thanks in advance.
YihengZhu
Posts: 1
Joined: Wed May 05, 2021 9:27 am

Re: runCOACH.pl error

Post by YihengZhu »

Hello Irin Sultana,
I think the reason may be that the GO:parser module has not successfully installed.
Can you use this link (https://metacpan.org/pod/GO::Parser) to re-install and test the GO:parser module ?

Thanks
Yiheng
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