Zhanglab forum

Dear Forum Members,

I recently run into trouble trying to align the two molecules in the attachment on the LSalign web server (https://zhanggroup.org/LS-align/output/ ... 34_470049/). Obviously, the query (3EJQ_transformed.mol2) is split and the transformation is only applied to one part of the molecule.

Is there a simple explanation for this behavior? Is it possible to get rid of this bug?

Many thanks in advance.

The error is caused by the file format required by LSalign. I have converted the format of the input model (see attachment) using OpenBabel and the program is working now. Here is the result:
https://zhanggroup.org/LS-align/output/ ... 00_621874/
Please let me know if you have any questions.

Many thanks for explaining the source of the problem. Now, everything works as expected.