Regarding the second iteration of the TASSER program in the I-TASSER standalone

[rupesh]

Hello,
My query is regarding the downloadable version of I-TASSER. As the name states, a second iteration of TASSER is performed right after the clustering step. While going through the script runI-TASSER.pl, I failed to find the exact location where the second iteration is executed. I am curious to know the answer and I'll be grateful if you can indulge my curiosity.

[zcx@umich.edu]

The second round of simulation is performed by I-TASSERmod/EMrefinement.pl which is called by line 1915 of I-TASSERmod/runI-TASSER.pl

[rupesh]

Thank you so much!