I have been trying to get I-TASSER standalone working on a Rocky Linux 8 SLURM cluster. I've been able to run the included example with some success, but a few of the threading processes fail with the following errors:
err_MUSTER_example2
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slurmstepd: error: couldn't chdir to `/tmp/harvey/ITexample2': No such file or directory: going to /tmp instead
slurmstepd: error: couldn't chdir to `/tmp/harvey/ITexample2': No such file or directory: going to /tmp instead
Illegal division by zero at /cm/local/apps/slurm/var/spool/job95404/slurm_script line 599.
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err_wdPPAS_example2
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slurmstepd: error: couldn't chdir to `/tmp/harvey/ITexample2': No such file or directory: going to /tmp instead
slurmstepd: error: couldn't chdir to `/tmp/harvey/ITexample2': No such file or directory: going to /tmp instead
Exception in thread "main" java.lang.NumberFormatException: For input string: "-NAN."
at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:2043)
at sun.misc.FloatingDecimal.parseFloat(FloatingDecimal.java:122)
at java.lang.Float.parseFloat(Float.java:451)
at java.lang.Float.valueOf(Float.java:416)
at c.a(c.java)
at c.main(c.java)
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err_wMUSTER_example2
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slurmstepd: error: couldn't chdir to `/tmp/harvey/ITexample2': No such file or directory: going to /tmp instead
slurmstepd: error: couldn't chdir to `/tmp/harvey/ITexample2': No such file or directory: going to /tmp instead
Exception in thread "main" java.lang.NumberFormatException: For input string: "-NAN."
at sun.misc.FloatingDecimal.readJavaFormatString(FloatingDecimal.java:2043)
at sun.misc.FloatingDecimal.parseFloat(FloatingDecimal.java:122)
at java.lang.Float.parseFloat(Float.java:451)
at java.lang.Float.valueOf(Float.java:416)
at e.a(e.java)
at e.main(e.java)
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I've seen these errors referenced elsewhere in this forum, but have not seen a solution.
Could anyone provide advice on how to proceed?
I-TASSER standalone errors
Moderator: robpearc
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- Posts: 4
- Joined: Tue Mar 19, 2024 6:11 pm
Re: I-TASSER standalone errors
I believe I have solved the "division by zero" issue by replacing zal* binaries as described in another thread.
I am still, however, seeing the java errors
I am still, however, seeing the java errors
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- Posts: 4
- Joined: Tue Mar 19, 2024 6:11 pm
***Need developer help*** I-TASSER standalone errors
Are any devs able to provide insight on my issues?