probelm in demo2

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ladimafakher
Posts: 17
Joined: Wed Aug 23, 2023 5:06 pm

probelm in demo2

Post by ladimafakher »

Dear Xiaogen
I put and downloaded the Demo and its library. Then I create the local_library directory, put all libraries in it, and extract all of them (Figure 1 to 6)
Then I changed the directory path to each library path in run_demo2.py(Figure). but I have some questions:
1-should I change the path directory in line 51"DEMO_EM_bindir = "/nfs/amino-home/zhanglabs/DEMO-EM/bin/DEMO_20200820/DEMO-EM"? If yes with which file? DEM-EM2 is the same file as DEMO-EM?
2-what about Function_DoIT? In this file lines 21 and 22. "refinebin = "/nfs/amino-library/Refinement/locprefmd/refine_single.sh" and "qzy = "/nfs/amino-home/zhanglabs/bin/qzy zhanglabs"
Should I change these two lines? if yes I could not able to find refine_single.sh file and qzy file?
I thank you if you help me with this issue.
best regards
Attachments
figure6.png
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figure5.png
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figure4.png
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xiaogenz
Posts: 153
Joined: Sun Apr 25, 2021 12:02 am

Re: probelm in demo2

Post by xiaogenz »

1. DEMO-EM is run when you need to use cryo-EM density maps. You can ignore it or change its directory to DEMO-EM2.
2. You can ignore them.

Please remember the domain files should be named as dom1.pdb, dom2.pdb, ....
Alice12
Posts: 2
Joined: Wed Oct 09, 2024 9:26 am

Re: probelm in demo2

Post by Alice12 »

Have you fixed these errors? Friday Night Funkin
phisola25
Posts: 1
Joined: Fri Oct 25, 2024 4:41 pm

Re: probelm in demo2

Post by phisola25 »

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