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Structure of PDB 5v8i Chain 13 Binding Site BS01

Receptor Information >5v8i Chain 13 (length=59) Species: 262724 (Thermus thermophilus HB27) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] PRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVA HLVRVEVVE

Ligand information >5v8i Chain 1A (length=2862) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] agaugguaagggcccacgguggaugccucggcacccgagccgaugaagga cguggcuaccugcgauaagccagggggagccgguagcgggcguggauccc uggauguccgaaugggggaacccggccggcgggaacgccggucaccgcgc gcgcggggggaaccuggggaacugaaacaucucaguacccagaggagagg aaagagaaaucgacucccugaguagcggcgagcgaaaggggaccagccua aaccguccggcuuguccgggcggggucguggggcccucggaccgaauccc cagccuagccgaagcuguugggaagcagcgccagagagggugaaagcccc guaggcgaaagguggggggauaggugaggguacccgaguaccccgugguu cguggagccaugggggaaucugggcggaccaccgccuaaggcuaaguacu ccgggugaccgauagcgcaccaguaccgugagggaaaggugaaaagaacc ccgggaggggagugaaauagagccugaaaccgugggcuuacaagcaguca cggccccgagggguuguggcgugccuauugaagcaugagccggcgacuca cggucgugggcgagcuuaagccguugaggcggaggcguagggaaaccgag uccgaacagggcgucuaguccgcggccguggacccgaaaccgggcgagcu agcccuggccagggugaagcuggggugagacccaguggaggcccgaaccg gugggggaugcaaaccccucggaugagcuggggcuaggagugaaaagcua accgagcccggagauagcugguucuccccgaaaugacuuuagggucagcc ucaggcgcugacuggggccuguagagcacugauagggcuagggggcccac cagccuaccaaacccugucaaacuccgaagggucccagguggagccuggg agugagggcgcgagcgauaacguccgcguccgagcgcgggaacaaccgag accgccagcuaaggcccccaagucugggcuaagugguaaaggauguggcg ccgcgaagacagccaggagguuggcuuagaagcagccauccuuuaaagag ugcguaauagcucacuggucgaguggcgccgcgccgaaaaugaucggggc ucaagcccagcgccgaagcugcgggucugggggaugaccccaggcgguag gggagcguucccgaugccgaugaaggccgacccgcgagggcggcuggagg uaagggaagugcgaaugccggcaugaguaacgauaaagagggugagaauc ccucucgccguaagcccaaggguuccuacgcaauggucgucagcguaggg uuaggcgggaccuaaggugaagccgaaaggcguagccgaagggcagccgg uuaauauuccggcccuucccgcaggugcgauggggggacgcucuaggcua gggggaccggagccauggacgagcccggccagaagcgcagggugggaggu aggcaaauccgccucccaaaagcucugcgugguggggaagcccgggugac aaccccccgaagccagggagccaagaaaagccucuaagcacaaccugcgg gaacccguaccgcaaaccgacacaggugggcgggugcaagagcacucagg cgcgcgggagaacccucgccaaggaacucugcaaguuggccccguaacuu cgggagaaggggugcucccuggggugaugagcuccggggagccgcaguga acaggcucuggcgacuguuuaccaaaaacacagcucucugcgaacucgua agaggagguauagggagcgacgcuugcccggugccggaaggucaagggga ggggugcaagccccgaaccgaagccccggugaacggcggccguaacuaua acgguccuaagguagcgaaauuccuugucggguaaguuccgaccugcacg aaaagcguaacgaccggagcgcugucucggcgagggacccggugaaauug aacuggccgugaagaugcggccuacccguggcaggacgaaaagaccccgu ggagcuuuacugcagccugguguuggcucuuggucgcgccugcguaggau aggugggagccugugaacccccgccuccgggugggggggaggcgccggug aaauaccacccuggcgcggcugggggccuaacccucggauggggggacag cgcuuggcgggcaguuugacuggggcggucgccuccuaaaagguaacgga ggcgcccaaagguccccucaggcgggacggaaauccgccggagagcgcaa ggguagaagggggccugacugcgaggccugcaagccgagcaggggcgaaa gccgggccuagugaaccgguggucccguguggaagggccaucgaucaacg gauaaaaguuaccccggggauaacaggcugaucucccccgagcguccaca gcggcggggagguuuggcaccucgaugucggcucgucgcauccuggggcu gaagaaggucccaaggguugggcuguucgcccauuaaagcggcacgcgag cuggguucagaacgucgugagacaguucggucucuauccgccacgggcgc aggaggcuugaggggggcucuuccuaguacgagaggaccggaagggacgc accucugguuucccagcugucccuccaggggcauaagcuggguagccaug ugcggaagggauaaccgcugaaagcaucuaagcgggaagcccgccccaag augaggccucccacggcagccgguaaggacccgggaagacgacccggugg augggccggggguguaagcgccgcgaggcguugagccgaccggucccaau cguccgaggucu <<<......<<<<<<<<<<<.....<<..<<<<<<<<<<<<......<<< <<<.((..((.>>>.....<<<<<<<..<<<))..)).>>>.....>>>> >>>...>>>....<<<....>>><<<<<<<<....>>>>>>>>.<<<<<. .>>>>>.>>...<<<<<<.....<......>......>>>>>.>...... ...<<....>>...<<<<<.....<<.....>>....>>>>>...<<<.. ..<<<<<<<<.....>>>>>>>>......<<<<<<<<<..<<<...<<<< <.<<<<.<<<...<<<<<......>>>>>((......<<<.....))>>> ...>>>...>>>>..>>>>>..>>>>>>>>>.>>>.....<<<<<<<<<. ......>>>>>>>>>......<<<<<..((((>>>>>..>>>......>> .>>>>>>.>>...............<<....>>....>>.........<< <<....>>>>..................>>>>>>>>>>>.......<<<< <<<<<<<..>>>>>>>>>>>...<............>.<<<<<<....<< <<<<<<<<<<<..<<<...<<<.....>>>...>>>...<<....>>..< <<<.....>>>>.....>>>>>>>>>>>>>..<<.<...<<<<<<..... <<<<<<<<<..<<<....<<<<<<......>>>>>>.....>>>...<<< ..<<<<........>>>>.>>>....>>>>>>>>>...<<<.....>>>. .....>>>>>>......>.>>..<<<<<<....<<<<<....>>>>><<< <<<<<<.....<<<<<<<<<...<<<...<<<<<<<<...<<<<<<.... ..>>>>.>>...>>>>>>>>..>>.>...>>>>>>>>>.....>>>>>>> .>>..<<<<<<<.<<......>>.>>>>>>>.....<<<......>>>.. .<<<<.<<<...<<<(((.....<<<<<<...........<<..<<<<<< <<<........<<<<<.<<....<<.........>>....>>........ .<<......>>...>>>>>....>>>>>>>>>.>>..........))).. ....>>>>>>.>>>...>>>>>>><<<<<<<<.....>>>>>>>>....> >>>>>..<<<<<...<<<......<<<<<.<<<....>>>>>>>>...>> >..>>>>>........>>>>>><......<<.....<<<<<<.......> >>>>><<<<....<<<<<.<<...<<<<<<...<<.....>>.>>>>>>. ...((<<<<.<<...<<<...<<<....>>>...>>>...>>...<<<<< ........>>>>>))<<<<<<<<<<<<<...<<<<....<<<<<.<<<.. <<<<<.<<<<.<<..[[[[...>>>>>><<<...<<<<<<<<<<<<<<<< .<<.....>>>>>>>>>....>>>>>>>>>..>>>....<<<..>>>... ...>>>>>...>>>..>>>>>.........>>>>...>>...>>>>>>>> >>>>>>>..>>.....<<......>>>>>>>.<<<<<....>>>>>..>> >>..<<<<....<<<<<<<<.<<.........<.....<<<<<.....<. .>......>>>>><<<<<<<<<<<<.....>>>>>>>>>>>>........ ....<<<<<<<<<..<<<.........>>>..<<<<<<<.....<<<... .>>>.......>>>>>>>.<<<<<.<<<..<<<<<<<..<<<...<<... <<<<<....>>>>>...>>...>>>>>>>>..>>>>><<<<<<....... >>>>>>........<...........<<<<<<.....>>>>>>.....>. ...>>>>>..>>.>>>>>>>..>..>>.>>>>>>>>.>>>>>>.....>. ....<<<<<........>>>>>..<<<<<<<<.<<<.........<<<<. <<<<<<..<<<<<.<<<.<<<<<.<<<<<<<<<<<<<<<<.......... .<<<<<..<<<......<<<<<<<......>>>>>>>...>>>....... .....>>>>>..>>>>>>>>>>>>>>>>...<<<<<....>>>>>....> >>>>.>>>..>>>>>..<<<<.....>>>><<<<<<...........>>> >>>..<<...<<<<<<<...<<<<<<.......>>>>>>.....<<...( ((>>....>>>>>>>...<<<<..<<<......>>>..>>>>.<<<.... >>>.>>))).......<<<<<<<.<<..))))..>>>>>>>>>....... ......>>>>..>>>>>>.......<<<<.<.<<<<<<...<<....... >>...>>>>>>...>>>>.>.......<<<<<.<<<<<<..<<<<<<<<< ......>>>>>>..>>>.<<<<<.....>>>>>.....>>>>>..>...> >>.>>....<<<<<<<....>>>.>>>>........>>>>>>>>>>>... .<<<<<<<...<<<<..<<<<<<<...............>>>>>>>.<<< <<...<<<<...<<<<<<<<<<<]]]]>>>>>>...>>>>>...>>>>.> >>>>...<<<....<<<<<...........>>>>>....>>>.>>>>... ....>>>>>>>..<<<<.>>>>....<<<<<<<<<.......>>>>>... .<<<<<<<<.<<<....<<<<<....>>>>>...>>>..>>>>>.>>>.. .>>>>....>>>

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 5v8i Structural robustness of the ribosome inferred from X-ray crystal structures of the 30S ribosomal subunit and the 70S ribosome lacking ribosomal protein uS17 Resolution 3.25 Å Binding residue (original residue number in PDB) K10 S11 I13 G14 P16 K17 A21 A22 K24 A25 R29 R30 L31 Q32 P41 A42 G45 N46 K49 Binding residue (residue number reindexed from 1) K9 S10 I12 G13 P15 K16 A20 A21 K23 A24 R28 R29 L30 Q31 P40 A41 G44 N45 K48

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003735 structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component