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Structure of PDB 8t8c Chain 13 Binding Site BS01

Receptor Information >8t8c Chain 13 (length=59) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] PRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVA HLVRVEVVE

Ligand information >8t8c Chain 1A (length=2872) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] agaugguaagggcccacgguggaugccucggcacccgagccgaugaagga cguggcuaccugcgauaagccagggggagccgguagcgggcguggauccc uggauguccgaaugggggaacccggccggcgggaacgccggucaccgcgc gcgcggggggaaccuggggaacugaaacaucucaguacccagaggagagg aaagagaaaucgacucccugaguagcggcgagcgaaaggggaccagccua aaccguccggcuuguccgggcggggucguggggcccucggaccgaauccc cagccuagccgaagcuguugggaagcagcgccagagagggugaaagcccc guaggcgaaagguggggggauaggugaggguacccgaguaccccgugguu cguggagccaugggggaaucugggcggaccaccgccuaaggcuaaguacu ccgggugaccgauagcgcaccaguaccgugagggaaaggugaaaagaacc ccgggaggggagugaaauagagccugaaaccgugggcuuacaagcaguca cggccccgagggguuguggcgugccuauugaagcaugagccggcgacuca cggucgugggcgagcuuaagccguugaggcggaggcguagggaaaccgag uccgaacagggcgcagcggccgcaaaguccgcggccguggacccgaaacc gggcgagcuagcccuggccagggugaagcuggggugagacccaguggagg cccgaaccggugggggaugcaaaccccucggaugagcuggggcuaggagu gaaaagcuaaccgagcccggagauagcugguucuccccgaaaugacuuua gggucagccucaggcgcugacuggggccuguagagcacugauagggcuag ggggcccaccagccuaccaaacccugucaaacuccgaagggucccaggug gagccugggagugagggcgcgagcgauaacguccgcguccgagcgcggga acaaccgagaccgccagcuaaggcccccaagucugggcuaagugguaaag gauguggcgccgcgaagacagccaggagguuggcuuagaagcagccaucc uuuaaagagugcguaauagcucacuggucgaguggcgccgcgccgaaaau gaucggggcuuaagcccagcgccgaagcugcgggucugggggaugacccc aggcgguaggggagcguucccgaugccgaugaaggccgacccgcgagggc ggcuggagguaagggaagugcgaaugccggcaugaguaacgauaaagagg gugagaaucccucucgccguaagcccaaggguuccuacgcaauggucguc agcguaggguuaggcgggaccuaaggugaagccgaaaggcguagccgaag ggcagccgguuaauauuccggcccuucccgcaggugcgauggggggacgc ucuaggcuagggggaccggagccauggacgagcccggccagaagcgcagg gugggagguaggcaaauccgccucccaacaagcucugcgugguggggaag cccgggugacaaccccccgaagccagggagccaagaaaagccucuaagca caaccugcgggaacccguaccgcaaaccgacacaggugggcgggugcaag agcacucaggcgcgcgggagaacccucgccaaggaacucugcaaguuggc cccguaacuucgggagaaggggugcucccuggggugaugagccccgggga gccgcagugaacaggcucuggcgacuguuuaccaaaaacacagcucucug cgaacucguaagaggagguauagggagcgacgcuugcccggugccggaag gucaaggggaggggugcaagccccgaaccgaagccccggugaacggcggc cguaacuauaacgguccuaagguagcgaaauuccuugucggguaaguucc gaccugcacgaaaagcguaacgaccggagcgcugucucggcgagggaccc ggugaaauugaacuggccgugaagaugcggccuacccguggcaggacgaa aagaccccguggagcuuuacugcagccugguguuggcucuuggucgcgcc ugcguaggauaggugggagccugugaacccccgccuccggguggggggga ggcgccggugaaauaccacccuggcgcggcugggggccuaacccucggau ggggggacagcgcuuggcgggcaguuugacuggggcggucgccuccuaaa agguaacggaggcgcccaaagguccccucaggcgggacggaaauccgccg gagagcgcaaggguagaagggggccugacugcgaggccugcaagccgagc aggggcgaaagccgggccuagugaaccgguggucccguguggaagggcca ucgaucaacggauaaaaguuaccccggggauaacaggcugaucucccccg agcguccacagcggcggggagguuuggcaccucgaugucggcucgucgca uccuggggcugaagaaggucccaaggguugggcuguucgcccauuaaagc ggcacgcgagcuggguucagaacgucgugagacaguucggucucuauccg ccacgggcgcaggaggcuugaggggggcucuuccuaguacgagaggaccg gaagggacgcaccucugguuucccagcugucccuccaggggcauaagcug gguagccaugugcggaagggauaaccgcugaaagcaucuaagcgggaagc ccgccccaagaugaggccucccacggcagccgguaaggacccgggaagac cacccgguggaugggccggggguguaagcgccgcgaggcguugagccgac cggucccaaucguccgaggucu <<<......<<<<<<<<<<<.....<<..<<<<<<<<<<<<......<<< <<<.((..((.>>>.....<<<<<<<..<<<))..)).>>>.....>>>> >>>...>>>....<<<....>>><<<<<<<<....>>>>>>>>.<<<<<. .>>>>>.>>....<<<<<.....<<....>>......>>>>>........ ...<<....>>...<<<<<.....<<.....>>....>>>>>...<<<.. ..<<<<<<<<.....>>>>>>>>......<<<<<<<<<..<<<...<<<< <.<<<<.<<<...<<<<<......>>>>>((......<<<.....))>>> ...>>>...>>>>..>>>>>..>>>>>>>>>.>>>.....<<<<<<<<<. ......>>>>>>>>>......<<<<<..((((>>>>>..>>>......>> .>>>>>>.>>...............<<....>>....>>.........<< <<....>>>>..................>>>>>>>>>>>.......<<<< <<<<<<<..>>>>>>>>>>>...<............>.<<<<<<....<< <<<<<<<<<<<..<<<...<<<.....>>>...>>>...<<....>>..< <<<.....>>>>...<<<..>>>...>>>>>>>>>>>>>..<<.<...<< <<<<....<<<<<<<<<<..<<<....<<<<<<......>>>>>>..... >>>...<<<..<<<<........>>>>.>>>....>>>>>>>>>>..<<< .....>>>......>>>>>>......>.>>..<<<<<<....<<<<<... .>>>>><<<<<<<<<.....<<<<<<<<<...<<<...<<<<<<<<...< <<<<<......>>>>.>>...>>>>>>>>..>>.>...>>>>>>>>>... ..>>>>>>>.>>..<<<<<<<.<<......>>.>>>>>>>.....<<<.. ....>>>...<<<<.<<<...<<<(((.....<<<<<<...........< <..<<<<<<<<<........<<<<..<<<...<<<.......>>>...>> >.........<<......>>....>>>>....>>>>>>>>>.>>...... ....)))......>>>>>>.>>>...>>>>>>><<<<<<<<.....>>>> >>>>....>>>>>>..<<<<<...<<<......<<<<<.<<<....>>>> >>>>...>>>..>>>>>........>>>>>><......<<.....<<<<< <.......>>>>>><<<<....<<<<<.<<...<<<<<<...<<.....> >.>>>>>>....((<<<<.<<...<<<...<<<....>>>...>>>...> >...<<<<<........>>>>>))<<<<<<<<<<<<<...<<<<....<< <<<.<<<..<<<<<.<<<<.<<..[[[[...>>>>>><<<...<<<<<<< <<<<<<<<<.<<.....>>>>>>>>>.....>>>>>>>>>..>>><...< <<..>>>.....>>>>>>...>>>..>>>>>.........>>>>...>>. ..>>>>>>>>>>>>>>>..>>.....<<......>>>>>>>.<<<<<... .>>>>>..>>>>..<<<<....<<<<<<<<.<<.........<.....<< <<<....<....>.....>>>>><<<<<<<<<<<<.....>>>>>>>>>> >>............<<<<<<<<<..<<<.........>>>..<<<<<<<. ....<<<....>>>.......>>>>>>>.<<<<<.<<<..<<<<<<<..< <<...<<...<<<<<....>>>>>...>>...>>>>>>>>..>>>>><<< <<<.......>>>>>>........<...........<<<<<<.....>>> >>>.....>....>>>>>..>>.>>>>>>>..>..>>.>>>>>>>>.>>> >>>.....>.....<<<<<........>>>>>..<<<<<<<<.<<<.... .....<<<<.<<<<<<..<<<<<.<<<.<<<<<.<<<<<<<<<<<<<<<< ...........<<<<<..<<.......<<<<<<<<....>>>>>>>>... .>>............>>>>>..>>>>>>>>>>>>>>>>...<<<<<.... >>>>>....>>>>>.>>>..>>>>>..<<<<.....>>>><<<<<<.... .......>>>>>>..<<...<<<<<<<...<<<<<<.......>>>>>>. ....<<...(((>>....>>>>>>>...<<<<..<<<......>>>..>> >>.<<<....>>>.>>))).......<<<<<<<.<<..))))..>>>>>> >>>.............>>>>..>>>>>>.......<<<<.<.<<<<<<.. .<<.......>>...>>>>>>...>>>>.>.......<<<<<.<<<<<<. .<<<<<<<<<......>>>>>>>..>>.<<<<<.....>>>>>.....>> >>>..>...>>>.>>....<<<<<<<....>>>.>>>>........>>>> >>>>>>>....<<<<<<<...<<<<..<<<<<<<...............> >>>>>>.<<<<<...<<<<...<<<<<<<<<<<]]]]>>>>>>...>>>> >...>>>>.>>>>>...<<<....<<<<<...........>>>>>....> >>.>>>>.......>>>>>>>..<<<<.>>>>....<<<<<<<<<..... ..>>>>>....<<<<<<<<.<<<....<<<<<....>>>>>...>>>..> >>>>.>>>...>>>>....>>>

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 8t8c Practical Synthesis of N -Formylmethionylated Peptidyl-tRNA Mimics. Resolution 2.6 Å Binding residue (original residue number in PDB) K10 S11 I13 G14 K17 D18 A21 A22 K24 A25 R29 R30 L31 Q32 P41 A42 G45 N46 K49 Binding residue (residue number reindexed from 1) K9 S10 I12 G13 K16 D17 A20 A21 K23 A24 R28 R29 L30 Q31 P40 A41 G44 N45 K48

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003735 structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component