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Structure of PDB 6ucq Chain 1l Binding Site BS01

Receptor Information >6ucq Chain 1l (length=122) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] PTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRK VAKVRLTSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGV YDAAGVKDRKKSRSKYGTKKPK

Ligand information >6ucq Chain 1a (length=1499) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uuggagaguuugauccuggcucagggugaacgcuggcggcgugccuaaga caugcaagucgugcgggccgcggguccguggucagcggcggacgggugag uaacgcgugggugaccuacccggaagagggggacaacccggggaaacucg ggcuaaucccccauguggacccgccccuugggguguguccaaagggcuuu gcccgcuuccggaugggcccgcgucccaucagcuaguuggugggguaaug gcccaccaaggcgacgacggguagccggucugagaggauggccggccaca ggggcacugagacacgggccccacuccuacgggaggcagcaguuaggaau cuuccgcaaugggcgcaagccugacggagcgacgccgcuuggaggaagaa gcccuucgggguguaaacuccugaacccgggacgaaacccccgacgaggg gacugacgguaccgggguaauagcgccggccaacuccgugccagcagccg cgguaauacggagggcgcgagcguuacccggauucacugggcguaaaggg cguguaggcggccuggggcgucccaugugaaagaccacggcucaaccgug ggggagcgugggauacgcucaggcuagacggugggagagggugguggaau ucccggaguagcggugaaaugcgcagauaccgggaggaacgccgauggcg aaggcagccaccugguccacccgugacgcugaggcgcgaaagcgugggga gcaaaccggauuagauacccggguagucccgcccuaaacgaugcgcgcua ggucucugggucuccugggggccgaagcuaacgcguuaagcgcgccgccu ggggaguacggccgcaaggcugaaacucaaaggaauugacgggggcccgc acaagcgguggagcaugugguuuaauucgaagcaacgcgaagaaccuuac caggccuugacaugcuagggaacccgggugaaagccuggggugccccgcg aggggagcccuagcacaggugcugcauggccgucgucagcucgugccgug agguguuggguuaagucccgcaacgagcgcaacccccgccguuaguugcc agcgguucggccgggcacucuaacgggacugcccgcgaaagcgggaggaa ggaggggacgacgucuggucagcauggcccuuacggccugggcgacacac gugcuacaaugcccacuacaaagcgaugccacccggcaacggggagcuaa ucgcaaaaaggugggcccaguucggauuggggucugcaacccgaccccau gaagccggaaucgcuaguaaucgcggaucagccaugccgcggugaauacg uucccgggccuuguacacaccgcccgucacgccaugggagcgggcucuac ccgaagucgccgggagccuacgggcaggcgccgaggguagggcccgugac uggggcgaagucguaacaagguagcuguaccggaaggugcggcuggauc .....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..<< <.<<<..<<<..<<.<<<<<<<<..>>>>>>>>.>>>>>......<<... ....<<<<<<<<..<<...<<<<<<<.<<<<<...<<<<<<......>>> >>.>...>>>>>...<<<<<.<<<<<....>>>>>.>>>>>..<<<<... >>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<<...... .>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>. <<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>>>..... ...<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<...... <<<<....>>>>.....>>>>....<<<<<........<<<<.....>>> >..........>>>>>......<<<<<(((...<<<<<.....<<.)))> >.......>>>>>>>>>>..>>>>>>>>>..........<<<((.....< <<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....>>>>> >....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<<<....< <<<<<<.<..<<<......>>>.....>.>>>>>>>...........<<. ...>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<<.<<... <<...<<<<.<.....>.>>>>...>>>>>>>..........<<<<<<.. <<<<<<<<<<...>>>>>>>>>>...<<..))>>.....>>>>>>.>>>. <<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<<<<<. <<.<<<<<<..<<<<<<<<<<......<<........>>..........< <<<<<<......<<<<<<<...<<<<<<<....>>>>>>>...<<<.... ..>>>...>>>>>>>.<<<.<<<..<<<<<<.......<<<<<<<<<... .>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<..<<< ..<<<.....>>>>>>...>>>>>>>.....<<<<<....>>>>>..... ...>>>>.........>>>...>>>>>>>>>...>>>>>>>...>>.>>> >>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>..>>... .>>>.....>>>>>>>......<....<<<<<<<........>>>>>>>. ...>.....>>>>>>....<<<<<<<..........>>>>>>>......> >...>>>>>>>>>>.>>.......<<.<.<<<<.<<<..<<<<<<<<<<< <<...<.<<<<....<<<....>>>.>>>>.>..>>>>>>>>>>>>>..> >>.>>>>..>.>>.........<<<<<<<<<....>>>>>>>>>.....

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 6ucq Structural basis for ribosome recycling by RRF and tRNA. Resolution 3.5 Å Binding residue (original residue number in PDB) P5 T6 N8 Q9 R12 K13 R15 E16 L27 P31 F32 R33 R34 K46 K47 P48 N49 S50 A51 R53 T61 Y69 P71 G72 E73 R86 G87 R89 V90 K91 X92 R97 R113 K114 K115 S116 R117 S118 K119 K123 K124 Binding residue (residue number reindexed from 1) P1 T2 N4 Q5 R8 K9 R11 E12 L23 P27 F28 R29 R30 K42 K43 P44 N45 S46 A47 R49 T57 Y65 P67 G68 E69 R82 G83 R85 V86 K87 X88 R93 R109 K110 K111 S112 R113 S114 K115 K119 K120

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0000049 tRNA binding GO:0003735 structural constituent of ribosome GO:0019843 rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

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View graph for Cellular Component