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Structure of PDB 5fdv Chain 2t Binding Site BS01

Receptor Information >5fdv Chain 2t (length=98) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] PKRNLSALKRHRQSLKRRLRNKAKKSAIKTLSKKAIQLAQEGKAEEALKI MRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEAAGAPLIGGG

Ligand information >5fdv Chain 2a (length=1504) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uuggagaguuugauccuggcucagggugaacgcuggcggcgugccuaaga caugcaagucgugcgggccgcgggguacuccguggucagcggcggacggg ugaguaacgcgugggugaccuacccggaagagggggacaacccggggaaa cucgggcuaaucccccauguggacccgccccuugggguguguccaaaggg cuuugcccgcuuccggaugggcccgcgucccaucagcuaguugguggggu aauggcccaccaaggcgacgacggguagccggucugagaggauggccggc cacaggggcacugagacacgggccccacuccuacgggaggcagcaguuag gaaucuuccgcaaugggcgcaagccugacggagcgacgccgcuuggagga agaagcccuucgggguguaaacuccugaacccgggacgaaacccccgacg aggggacugacgguaccgggguaauagcgccggccaacuccgugccagca gccgcgguaauacggagggcgcgagcguuacccggauucacugggcguaa agggcguguaggcggccuggggcgucccaugugaaagaccacggcucaac cgugggggagcgugggauacgcucaggcuagacggugggagaggguggug gaauucccggaguagcggugaaaugcgcagauaccgggaggaacgccgau ggcgaaggcagccaccugguccacccgugacgcugaggcgcgaaagcgug gggagcaaaccggauuagauacccggguaguccacgcccuaaacgaugcg cgcuaggucucugggucuccugggggccgaagcuaacgcguuaagcgcgc cgccuggggaguacggccgcaaggcugaaacucaaaggaauugacggggg cccgcacaagcgguggagcaugugguuuaauucgaagcaacgcgaagaac cuuaccaggccuugacaugcuagggaacccgggugaaagccuggggugcc ccgcgaggggagcccuagcacaggugcugcauggccgucgucagcucgug ccgugagguguuggguuaagucccgcaacgagcgcaacccccgccguuag uugccagcgguucggccgggcacucuaacgggacugcccgcgaaagcggg aggaaggaggggacgacgucuggucagcauggcccuuacggccugggcga cacacgugcuacaaugcccacuacaaagcgaugccacccggcaacgggga gcuaaucgcaaaaaggugggcccaguucggauuggggucugcaacccgac cccaugaagccggaaucgcuaguaaucgcggaucagccaugccgcgguga auacguucccgggccuuguacacaccgcccgucacgccaugggagcgggc ucuacccgaagucgccgggagccuacgggcaggcgccgaggguagggccc gugacuggggcgaagucguaacaagguagcuguaccggaaggugcggcug gauc .....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..<< <.<<<..<<<..<<.<<<<<<<<<....>>>>>>>>>.>>>>>......< <.......<<<<<<<<..<<...<<<<<<<.<<<<<....<<<<<..... .>>>>>.....>>>>>...<<<<<.<<<<<....>>>>>.>>>>>..<<< <...>>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<<.. .....>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>> .>>.<<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>>>. .......<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<.. ....<<<<....>>>>.....>>>>....<<<<<........<<<<.... .>>>>..........>>>>>......<<<<<(((...<<<<<.....<<. )))>>.......>>>>>>>>>>..>>>>>>>>>..........<<<((.. ...<<<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....> >>>>>....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<<<. ...<<<<<<<.<..<<<......>>>.....>.>>>>>>>.......... .<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<<<< <...<<...<<<<.<.....>.>>>>...>>>>>>>>..........<<< <<<..<<<<<<<<<<...>>>>>>>>>>...<<..))>>.....>>>>>> .>>>.<<<......<<<<....>>>>....>>>..)))).]<<<<<.<<< <<<<.<<.<<<<<<..<<<<<<<<.<......<<........>>...... ....<<<<<<<......<<<<<<<<..<<<<<<<....>>>>>>>..... <......>....>>>>>>>>.<<<.<<<..<<<<<<.......<<<<<<< <<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<< ..<<<..<<<.....>>>>>>...>>>>>>>.....<<<<<....>>>>> ........>>>>.........>>>...>>>>>>>>>...>>>>>>>...> ..>>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>.. >>....>>>.....>>>>>>>......<....<<<<<<<........>>> >>>>....>.....>>>>>>....<<<<<<<..........>>>>>>>.. ....>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<<< <<<<<<<...<.<<<<....<<<....>>>.>>>>.>..>>>>>>>>>>> >>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>>>>. ....

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 5fdv Structure of the mammalian antimicrobial peptide Bac7(1-16) bound within the exit tunnel of a bacterial ribosome. Resolution 2.8 Å Binding residue (original residue number in PDB) N9 A12 K14 R15 H16 R17 Q18 S19 K21 R22 R23 N26 A28 K29 S31 A32 K34 T35 K38 K39 E51 K54 R57 E60 S61 D64 K68 S70 H73 A78 R79 K81 S82 R83 M85 R89 G101 G103 Binding residue (residue number reindexed from 1) N4 A7 K9 R10 H11 R12 Q13 S14 K16 R17 R18 N21 A23 K24 S26 A27 K29 T30 K33 K34 E46 K49 R52 E55 S56 D59 K63 S65 H68 A73 R74 K76 S77 R78 M80 R84 G96 G98

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003723 RNA binding GO:0003735 structural constituent of ribosome GO:0019843 rRNA binding GO:0070181 small ribosomal subunit rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005829	cytosol
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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