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Structure of PDB 1s7q Chain A Binding Site BS01

Receptor Information >1s7q Chain A (length=276) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] GPHSLRYFVTAVSRPGLGEPRYMEVGYVDDTEFVRFDSDAENPRYEPRAR WMEQEGPEYWERETQKAKGNEQSFRVDLRTLLGYYNQSKGGSHTIQVISG CEVGSDGRLLRGYQQYAYDGCDYIALNEDLKTWTAADMAALITKHKWEQA GEAERLRAYLEGTCVEWLRRYLKNGNATLLRTDSPKAHVTHHSRPEDKVT LRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP LGKEQYYTCHVYHQGLPEPLTLRWEP

Ligand information >1s7q Chain C (length=8) Species: 11627 (Lymphocytic choriomeningitis virus (strain WE)) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] AVYNFATM

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 1s7q Determination of structural principles underlying three different modes of lymphocytic choriomeningitis virus escape from CTL recognition. Resolution 1.99 Å Binding residue (original residue number in PDB) Y7 E24 E63 K66 N70 F74 D77 Y84 I95 Q114 Y116 T143 K146 W147 E152 R155 L156 Y159 Y171 Binding residue (residue number reindexed from 1) Y7 E24 E63 K66 N70 F74 D77 Y84 I95 Q114 Y116 T143 K146 W147 E152 R155 L156 Y159 Y171

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0005515 protein binding GO:0042605 peptide antigen binding

	Biological Process
GO:0001913	T cell mediated cytotoxicity
GO:0001916	positive regulation of T cell mediated cytotoxicity
GO:0002474	antigen processing and presentation of peptide antigen via MHC class I
GO:0002485	antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent
GO:0006955	immune response
GO:0010977	negative regulation of neuron projection development
GO:0019882	antigen processing and presentation
GO:0042590	antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0042742	defense response to bacterium
GO:0048839	inner ear development

	Cellular Component
GO:0009897	external side of plasma membrane
GO:0016020	membrane
GO:0030670	phagocytic vesicle membrane
GO:0042612	MHC class I protein complex
GO:0098553	lumenal side of endoplasmic reticulum membrane

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