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Structure of PDB 6nuo Chain QJ Binding Site BS01

Receptor Information >6nuo Chain QJ (length=99) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] KIRIKLRGFDHKTLDASAQKIVEAARRSGAQVSGPIPLPTRVRRFTVIRG PFKHKDSREHFELRTHNRLVDIINPNRKTIEQLMTLDLPTGVEIEIKTV

Ligand information >6nuo Chain QA (length=1500) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uggagaguuugauccuggcucagggugaacgcuggcggcgugccuaagac augcaagucgugcgggccgcggggucuccguggucagcggcggacgggug aguaacgcgugggugaccuacccggaagagggggacaacccggggaaacu cgggcuaaucccccauguggacccgccccuugggguguguccaaagggcu uugcccgcuuccggaugggcccgcgucccaucagcuaguuggugggguaa uggcccaccaaggcgacgacggguagccggucugagaggauggccggcca caggggcacugagacacgggccccacuccuacgggaggcagcaguuagga aucuuccgcaaugggcgcaagccugacggagcgacgccgcuuggaggaag aagcccuucgggguguaaacuccugaacccgggacgaaacccccgacgag gggacugacgguaccgggguaauagcgccggccaacuccgugccagcagc cgcgguaauacggagggcgcgagcguuacccggauucacugggcguaaag ggcguguaggcggccuggggcgucccaugugaaagaccacggcucaaccg ugggggagcgugggauacgcucaggcuagacggugggagaggguggugga auucccggaguagcggugaaaugcgcagauaccgggaggaacgccgaugg cgaaggcagccaccugguccacccgugacgcugaggcgcgaaagcguggg gagcaaaccggauuagauacccggguaguccacgcccuaaacgaugcgcg cuaggucucugggucuccugggggccgaagcuaacgcguuaagcgcgccg ccuggggaguacggccgcaaggcugaaacucaaaggaauugacgggggcc cgcacaagcgguggagcaugugguuuaauucgaagcaacgcgaagaaccu uaccaggccuugacaugcuagggaacccgggugaaagccuggggugcccc gcgaggggagcccuagcacaggugcugcauggccgucgucagcucgugcc gugagguguuggguuaagucccgcaacgagcgcaacccccgccguuaguu gccagcgguucggccgggcacucuaacgggacugcccgcgaaagcgggag gaaggaggggacgacgucuggucagcauggcccuuacggccugggcgaca cacgugcuacaaugcccacuacaaagcgaugccacccggcaacggggagc uaaucgcaaaaaggugggcccaguucggauuggggucugcaacccgaccc caugaagccggaaucgcuaguaaucgcggaucagccaugccgcggugaau acguucccgggccuuguacacaccgcccgucacgccaugggagcgggcuc uacccgaagucgccgggagccuacgggcaggcgccgaggguagggcccgu gacuggggcgaagucguaacaagguagcuguaccggaaggugcggcugga ....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..<<< .<<<..<<<..<<.<<<<<<<<<...>>>>>>>>>.>>>>>......<<. ......<<<<<<<<..<<...<<<<<<<.<<<<<....<<<<<......> >>>>.....>>>>>...<<<<<.<<<<<....>>>>>.>>>>>..<<<<. ..>>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<<.... ...>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.> >.<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>>>... .....<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<.... ..<<<<....>>>>.....>>>>....<<<<<........<<<<.....> >>>..........>>>>>......<<<<<(((...<<<<<.....<<.)) )>>.......>>>>>>>>>>..>>>>>>>>>..........<<<((.... .<<<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....>>> >>>....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<<<... .<<<<<<<.<..<<<......>>>.....>.>>>>>>>...........< <....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<<<<<. ..<<...<<<<.<.....>.>>>>...>>>>>>>>..........<<<<< <..<<<<<<<<<<...>>>>>>>>>>...<<..))>>.....>>>>>>.> >>.<<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<<< <<.<<.<<<<<<..<<<<<<<<<<......<<........>>........ ..<<<<<<<......<<<<<<<<..<<<<<<<....>>>>>>>.....<. .....>....>>>>>>>>.<<<.<<<..<<<<<<.......<<<<<<<<< ....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<.. .<....<<.....>>..>....>>>>>>>.....<<<<<....>>>>>.. ......>>>>.........>>>...>>>>>>>>>...>>>>>>>...>>. >>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>..>> ....>>>.....>>>>>>>......<....<<<<<<<........>>>>> >>....>.....>>>>>>....<<<<<<<..........>>>>>>>.... ..>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<<<<< <<<<<...<.<<<<....<<<....>>>.>>>>.>..>>>>>>>>>>>>> ..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>>>>...

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 6nuo Structural insights into mRNA reading frame regulation by tRNA modification and slippery codon-anticodon pairing. Resolution 3.2 Å Binding residue (original residue number in PDB) R5 K7 R9 H13 S35 G36 P37 I38 P39 P41 R43 V44 R45 T48 R51 G52 P53 F54 K55 H56 K57 S59 R60 R70 D73 Binding residue (residue number reindexed from 1) R3 K5 R7 H11 S33 G34 P35 I36 P37 P39 R41 V42 R43 T46 R49 G50 P51 F52 K53 H54 K55 S57 R58 R68 D71

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0000049 tRNA binding GO:0003723 RNA binding GO:0003735 structural constituent of ribosome GO:0019843 rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component