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Structure of PDB 5j3c Chain QS Binding Site BS01

Receptor Information >5j3c Chain QS (length=83) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] PRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAV YNGKQHVPVYITENMVGHKLGEFAPTRTYRGHG

Ligand information >5j3c Chain QA (length=1500) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uuggagaguuugauccuggcucagggugaacgcuggcggcgugccuaaga caugcaagucgugcgggccgcggguccguggucagcggcggacgggugag uaacgcgugggugaccuacccggaagagggggacaacccggggaaacucg ggcuaaucccccauguggacccgccccuugggguguguccaaagggcuuu gcccgcuuccggaugggcccgcgucccaucagcuaguuggugggguaaug gcccaccaaggcgacgacggguagccggucugagaggauggccggccaca ggggcacugagacacgggccccacuccuacgggaggcagcaguuaggaau cuuccgcaaugggcgcaagccugacggagcgacgccgcuuggaggaagaa gcccuucgggguguaaacuccugaacccgggacgaaacccccgacgaggg gacugacgguaccgggguaauagcgccggccaacuccgugccagcagccg cgguaauacggagggcgcgagcguuacccggauucacugggcguaaaggg cguguaggcggccuggggcgucccaugugaaagaccacggcucaaccgug ggggagcgugggauacgcucaggcuagacggugggagagggugguggaau ucccggaguagcggugaaaugcgcagauaccgggaggaacgccgauggcg aaggcagccaccugguccacccgugacgcugaggcgcgaaagcgugggga gcaaaccggauuagauacccggguaguccacgcccuaaacgaugcgcgcu aggucucugggucuccugggggccgaagcuaacgcguuaagcgcgccgcc uggggaguacggccgcaaggcugaaacucaaaggaauugacgggggcccg cacaagcgguggagcaugugguuuaauucgaagcaacgcgaagaaccuua ccaggccuugacaugcuagggaacccgggugaaagccuggggugccccgc gaggggagcccuagcacaggugcugcauggccgucgucagcucgugccgu gagguguuggguuaagucccgcaacgagcgcaacccccgccguuaguugc cagcgguucggccgggcacucuaacgggacugcccgcgaaagcgggagga aggaggggacgacgucuggucagcauggcccuuacggccugggcgacaca cgugcuacaaugcccacuacaaagcgaugccacccggcaacggggagcua aucgcaaaaaggugggcccaguucggauuggggucugcaacccgacccca ugaagccggaaucgcuaguaaucgcggaucagccaugccgcggugaauac guucccgggccuuguacacaccgcccgucacgccaugggagcgggcucua cccgaagucgccgggagccuacgggcaggcgccgaggguagggcccguga cuggggcgaagucguaacaagguagcuguaccggaaggugcggcuggauc .....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..<< <.<<<..<<<..<<.<<<<<<<<..>>>>>>>>.>>>>>......<<... ....<<<<<<<<..<<...<<<<<<<.<<<<<....<<<<<......>>> >>.....>>>>>...<<<<<.<<<<<....>>>>>.>>>>>..<<<<... >>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<<...... .>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.>>. <<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>>>..... ...<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<...... <<<<....>>>>.....>>>>....<<<<<......<.<<<<.....>>> >..>.......>>>>>......<<<<<(((...<<<<<.....<<.)))> >.......>>>>>>>>>>..>>>>>>>>>..........<<<((.....< <<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....>>>>> >....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<<<....< <<<<<<.<..<<<......>>>.....>.>>>>>>>...........<<. ...>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<<<<<... <<...<<<<.<.....>.>>>>...>>>>>>>>..........<<<<<<. .<<<<<<<<<<...>>>>>>>>>>...<<..))>>.....>>>>>>.>>> .<<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<<<<< .<<.<<<<<<..<<<<<<<<<<......<<........>>.......... <<<<<<<......<<<<<<<<..<<<<<<<....>>>>>>>...<..... .....>..>>>>>>>>.<<<.<<<..<<<<<<.......<<<<<<<<<.. ..>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<..<< <..<<<.....>>>>>>...>>>>>>>.....<<<<<....>>>>>.... ....>>>>.........>>>...>>>>>>>>>...>>>>>>>...>>.>> >>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>..>>.. ..>>>.....>>>>>>>......<....<<<<<<<........>>>>>>> ....>.....>>>>>>....<<<<<<<..........>>>>>>>...... >>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<<<<<<< <<<...<.<<<<....<<<....>>>.>>>>.>..>>>>>>>>>>>>>.. >>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>>>>.....

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 5j3c Uniformity of Peptide Release Is Maintained by Methylation of Release Factors. Resolution 3.04 Å Binding residue (original residue number in PDB) P2 R3 S4 L5 K6 K7 F10 H14 W34 R36 R37 Y52 G54 K70 G72 E73 T77 R78 Y80 H83 Binding residue (residue number reindexed from 1) P1 R2 S3 L4 K5 K6 F9 H13 W33 R35 R36 Y51 G53 K69 G71 E72 T76 R77 Y79 H82

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003723 RNA binding GO:0003735 structural constituent of ribosome GO:0019843 rRNA binding

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component