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Structure of PDB 7jt3 Chain R Binding Site BS01

Receptor Information >7jt3 Chain R (length=114) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEG QIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQR TKTNARTRKGPRKP

Ligand information >7jt3 Chain 3 (length=1539) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] aauugaagaguuugaucauggcucagauugaacgcuggcggcaggccuaa cacaugcaagucgaacgguaacaggaagaagcuugcuucuuugcugacga guggcggacgggugaguaaugucugggaaacugccugauggagggggaua acuacuggaaacgguagcuaauaccgcauaacgucgcaagaccaaagagg gggaccuucgggccucuugccaucggaugugcccagaugggauuagcuag uaggugggguaacggcucaccuaggcgacgaucccuagcuggucugagag gaugaccagccacacuggaacugagacacgguccagacuccuacgggagg cagcaguggggaauauugcacaaugggcgcaagccugaugcagccaugcc gcguguaugaagaaggccuucggguuguaaaguacuuucagcggggagga agggaguaaaguuaauaccuuugcucauugacguuacccgcagaagaagc accggcuaacuccgugccagcagccgcgguaauacggagggugcaagcgu uaaucggaauuacugggcguaaagcgcacgcaggcgguuuguuaagucag augugaaauccccgggcucaaccugggaacugcaucugauacuggcaagc uugagucucguagagggggguagaauuccagguguagcggugaaaugcgu agagaucuggaggaauaccgguggcgaaggcggcccccuggacgaagacu gacgcucaggugcgaaagcguggggagcaaacaggauuagauacccuggu aguccacgccguaaacgaugucgacuuggagguugugcccuugaggcgug gcuuccggagcuaacgcguuaagucgaccgccuggggaguacggccgcaa gguuaaaacucaaaugaauugacgggggcccgcacaagcgguggagcaug ugguuuaauucgaugcaacgcgaagaaccuuaccuggucuugacauccac ggaaguuuucagagaugagaaugugccuucgggaaccgugagacaggugc ugcauggcugucgucagcucguguugugaaauguuggguuaagucccgca acgagcgcaacccuuauccuuuguugccagcgguccggccgggaacucaa aggagacugccagugauaaacuggaggaagguggggaugacgucaaguca ucauggcccuuacgaccagggcuacacacgugcuacaauggcgcauacaa agagaagcgaccucgcgagagcaagcggaccucauaaagugcgucguagu ccggauuggagucugcaacucgacuccaugaagucggaaucgcuaguaau cguggaucagaaugccacggugaauacguucccgggccuuguacacaccg cccgucacaccaugggaguggguugcaaaagaaguagguagcuuaaccuu cgggagggcgcuuaccacuuugugauucaugacuggggcgaagucguaac aagguaaccguaggggaaccugcgguuggaucaccuccu .......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..... <<<.<<<..<<<..<<.<...<<<.<<<<<......>>>>>..>>>.>.. >>>>>......<<.......<<<<<<<..<<...<<<<<<<.<..<<... <<<<<<......>>>>>.>....>>.>.....<<<....>>>....<<<< <.<.<<....>>>>>>>>.>>>>>>>..>>.>>>>>>><<<....<<<.. <<<<<<<.........>>>>>>>>>>......>>>..<<<<<<<<....> >>>...>>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>. ..>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>> >>..<<<<.......<<<....>>>......>>>>..<<.<<<<<..... .<.<<<<<<<<.......>>>>>>>>.>........>>>>>....>>.<< <<<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>> >>>>>..........<<<((.....<<<<...<<<.<<<<<<<.<<<<<< <<<<......<<<<<<.....>>>>>>....>>>>>>>..>>>>>>>>>> ...<<<<<<<<...<<<<<<<....<<<<<<<<...<<<......>>>.. ....>>>>>>>.>..........<<....>>.>>>>>>>..>>>>.>>>> ...>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>.. .>>>>>>>>..........<<<<<<..<<<<<<<<<<<<.....>>>>>> >>>>>>...<<..))>>.....>>>>>>.>>>.<<<......<<<<.... >>>>....>>>..)))).].<<<<.<<<<<<<.<<.<<<<<<..<<<<<< <<<<......<<........>>..........<<<<<<<.......<<<< <<..<<<<<<<....>>>>>>>...<......>..>>>>>.>..<<<.<< ...<<<<<<.......<<<<<<<<<....>>>..<<<<......>>>>.. >>>>>>.....<<<<.<<<<<<<...<...<<<.....>>>.>....>>> >>>>.....<<<<<.....>>>>>........>>>>.........>>>.. .>>>.>>>>>...>>>>>>>...>>.>>>>>>>>.....<<<<<<<.... .<<<..<<...<<<....>>>...>>....>>>.....>>>>>>>..... .<....<<<<<<<........>>>>>>>....>.....>>>>>>....<< <<<<<.........>>>>>>>......>>...>>>>>>>>>>.>.....< ..<<.<.<.<<.<<<..<<<<<<<<<<<<....<<<<<<.<<<...<<.. ..>>..>>>>>>>>>...>>>>>>>>>>>>..>>>.>>.>..>.>>...> .....<<<<<<<<<....>>>>>>>>>............

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 7jt3 ArfB can displace mRNA to rescue stalled ribosomes Resolution 3.7 Å Binding residue (original residue number in PDB) H11 K12 H13 I16 Y22 G23 V24 G25 K26 T27 R28 Y85 R86 R89 L94 P95 V96 R97 G98 Q99 R100 K102 T103 N104 A105 R106 T107 R108 R112 Binding residue (residue number reindexed from 1) H11 K12 H13 I16 Y22 G23 V24 G25 K26 T27 R28 Y85 R86 R89 L94 P95 V96 R97 G98 Q99 R100 K102 T103 N104 A105 R106 T107 R108 R112

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0000049 tRNA binding GO:0003676 nucleic acid binding GO:0003723 RNA binding GO:0003735 structural constituent of ribosome GO:0005515 protein binding GO:0019843 rRNA binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component