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Structure of PDB 3jbu Chain T Binding Site BS01

Receptor Information >3jbu Chain T (length=85) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] NIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFN EMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA

Ligand information >3jbu Chain A (length=1530) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] ugaagaguuugaucauggcucagauugaacgcuggcggcaggccuaacac augcaagucgaacgguaacaggaagaagcuugcuucuuugcugacgagug gcggacgggugaguaaugucugggaaacugccugauggagggggauaacu acuggaaacgguagcuaauaccgcauaacgucgcaagaccaaagaggggg accuucgggccucuugccaucggaugugcccagaugggauuagcuaguag gugggguaacggcucaccuaggcgacgaucccuagcuggucugagaggau gaccagccacacuggaacugagacacgguccagacuccuacgggaggcag caguggggaauauugcacaaugggcgcaagccugaugcagccaugccgcg uguaugaagaaggccuucggguuguaaaguacuuucagcggggaggaagg gaguaaaguuaauaccuuugcucauugacguuacccgcagaagaagcacc ggcuaacuccgugccagcagccgcgguaauacggagggugcaagcguuaa ucggaauuacugggcguaaagcgcacgcaggcgguuuguuaagucagaug ugaaauccccgggcucaaccugggaacugcaucugauacuggcaagcuug agucucguagagggggguagaauuccagguguagcggugaaaugcguaga gaucuggaggaauaccgguggcgaaggcggcccccuggacgaagacugac gcucaggugcgaaagcguggggagcaaacaggauuagauacccugguagu ccacgccguaaacgaugucgacuuggagguugugcccuugaggcguggcu uccggagcuaacgcguuaagucgaccgccuggggaguacggccgcaaggu uaaaacucaaaugaauugacgggggcccgcacaagcgguggagcaugugg uuuaauucgaugcaacgcgaagaaccuuaccuggucuugacauccacgga aguuuucagagaugagaaugugccuucgggaaccgugagacaggugcugc auggcugucgucagcucguguugugaaauguuggguuaagucccgcaacg agcgcaacccuuauccuuuguugccagcgguccggccgggaacucaaagg agacugccagugauaaacuggaggaagguggggaugacgucaagucauca uggcccuuacgaccagggcuacacacgugcuacaauggcgcauacaaaga gaagcgaccucgcgagagcaagcggaccucauaaagugcgucguaguccg gauuggagucugcaacucgacuccaugaagucggaaucgcuaguaaucgu ggaucagaaugccacggugaauacguucccgggccuuguacacaccgccc gucacaccaugggaguggguugcaaaagaaguagguagcuuaaccuucgg gagggcgcuuaccacuuugugauucaugacuggggugaagucguaacaag guaaccguaggggaaccugcgguuggauca ....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.....<<< .<<<..<<<..<<.<<...<<<.<<<........>>>.>.>>.>>..>>> >>......<<.......<<<<<<<..<.....<<<<<<.<.<<.....<< <<<......>>>>>......>>.>.....<<<....>>>....<<<<<.. .<<....>>.>>>>>.>>>>>>....>.>>>>>>><<<....<<<...<< <<<<.........>>>>>>.>>>......>>>..<<<<<<<<....>>>> ...>>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>...> >>>>>.........<<.......<<....>>.....>>..>>.>>>>>>. .<<<<.......<<<<..>>>>......>>>>...<.<<<<<......<. .<<<<<.<.......>.>>>>>..>........>>>>>....>..<<<<< (((...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>> >>..........<<<((.....<<<<...<<<.<<<.<<<.<<<<<<<<< <......<<<<<<.....>>>>>>....>>>>>>>>..>>>>>.>>>... <<<<<<<<...<<<<<<<....<<<<<<<<...<<<......>>>..... .>>>>>>>>...........<<....>>.>>>>>>>..>>>>.>>>>... >>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...>> >>>>>>..........<<<<<<.<<<<<<<<<<<<<.....>>>>>>>>> >>>>..<<..))>>.....>>>>>>.>>>.<<<.......<<<....>>> .....>>>..))))..].<<<.<<<<<<<.<<.<<<.....<<<<<<<<. .......<<........>>..........<<<<<<<......<<<<<<<. .<<<<<<<....>>>>>>>...<<....>>..>>>>>.>>.<<<.<<... <<<<<<..<....<<<<<<<<<....>>>..<<<<......>>>>..>>> >>>.....<<<<.<<<<<<<...<...<<<.....>>>.>....>>>>>> >.....<<<<<.....>>>>>........>>>>.....>...>>>...>> >.>>>>>...>>>>>>>......>>>>>>>>.....<<<<<<<.....<< <..<<...<<<....>>>...>>....>>>.....>>>>>>>......<. ...<<<<<<<........>>>>>>>....>........>>>....<<<<< <...........>>>>>>......>>...>>>>>>>>>>..........< <.<.<<<<.<<<..<<<<<<<<<<<<....<<<<<..<<<<..<<....> >.>>>>.>>>>>...>>>>>>>>>>>>..>>>.>>>>..>.>>....... ..<<<<<<<<<....>>>>>>>>>......

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 3jbu Mechanisms of ribosome stalling by SecM at multiple elongation steps Resolution 3.64 Å Binding residue (original residue number in PDB) N2 K4 R9 Q12 R17 H19 S22 T29 P55 D58 R59 K63 H67 K68 K70 R73 K75 A76 T79 Binding residue (residue number reindexed from 1) N1 K3 R8 Q11 R16 H18 S21 T28 P54 D57 R58 K62 H66 K67 K69 R72 K74 A75 T78

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003723 RNA binding GO:0003735 structural constituent of ribosome GO:0008073 ornithine decarboxylase inhibitor activity GO:0019843 rRNA binding GO:0070181 small ribosomal subunit rRNA binding

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component