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Structure of PDB 7bog Chain T Binding Site BS01

Receptor Information >7bog Chain T (length=86) Species: 83333 (Escherichia coli K-12) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] ANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAF NEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA

Ligand information >7bog Chain A (length=1071) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] aaauugaagaguuugaucauggcucagauugaacgcuggcggcaggccua acacaugcaagucgaacgguaacaggaagaagcuugcuucuuugcugacg aguggcggacgggugaguaaugucugggaaacugccugauggagggggau aacuacuggaaacgguagcuaauaccgcauaacgucgcaagaccaaagag ggggaccuucgggccucuugccaucggaugugcccagaugggauuagcua guaggugggguaacggcucaccuaggcgacgaucccuagcuggucugaga ggaugaccagccacacuggaacugagacacgguccagacuccuacgggag gcagcaguggggaauauugcacaaugggcgcaagccugaugcagccaugc cgcguguaugaagaaggccuucggguuguaaaguacuuucagcggggagg aagggaguaaaguuaauaccuuugcucauugacguuacccgcagaagaag caccggcuaacuccgugccagcagccgcgguaauacggagggugcaagcg uuaaucggaauuacugggcguaaagcgcacgcaggcgguuuguuaaguca gaugugaaauccccgggcucaaccugggaacugcaucugauacuggcaag cuugagucucguagagggggguagaauuccagguguagcggugaaaugcg uagagaucuggaggaauaccgguggcgaaggcggcccccuggacgaagac ugacgcucaggugcgaaagcguggggagcaaacaggauuagauacccugg uaguccacgccguaaacgaugucgacuuggagguugugcccuugaggcgu ggcuuccggagcuaacgcguuaagucgaccgccuggggaguacggccgca agguuaaaacucaaaugaauugacgggggcgccuuguacacacccgucac accaugggaguggguugcaaaagaaguagguagcuuaaccuucgggaggg cgcuuaccacuuugugauucaugacuggggugaagucguauaaccguagg ggaaccugcgguuggaucacc ........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<.... .<<<.<<<..<<<..<<.<...<<<<<<.<<<....>>>.>>>.>>>.>. .>>>>>......<<.......<<<<<<<..<<...<<<<<<<.<.<<... ..<<<<<......>>>>>......>>.>.....<<<....>>>....<<< <<<..<<....>>>>>>>>.>>>>>>>..>>.>>>>>>><<<....<<<. .<<<<<<<.........>>>>>>>>>>......>>>..<<<<<<<<.... >>>>...>>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>> ...>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>> >>>..<<<<......<<<<....>>>>.....>>>>...<.<<<<<.... ..<.<<<<<<<<.......>>>>>>>>.>........>>>>>....>..< <<<<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>> >>>>>>..........<<<((.....<<<<...<<<.<<<<<<<.<<<<< <<<<<......<<<<<<.....>>>>>>....>>>>>>>>..>>>>>>>> >...<<<<<<<<...<<<<<<<....<<<<<<<<...<<<......>>>. .....>>>>>>>>...........<<....>>.>>>>>>>..>>>.>>>> >...>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>. ..>>>>>>>>..........<<<<<<.<<<<<<<<<<<<<.....>>>>> >>>>>>>>..<<..))>>.....>>>>>>.>>>.<<<......<<<<... .>>>>....>>>..)))).]<<<<<.<<<..>>>>>>.>>....<<.<.< <<<.<<<..<<<<<<<<<<<<....<<<<<<.<<<<..<<<..>>>.>>> >>>>>>>...>>>>>>>>>>>>..>>>.>>>>..>.>>...<<<<<<<<< ....>>>>>>>>>........

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 7bog A conserved rRNA switch is central to decoding site maturation on the small ribosomal subunit. Resolution 2.75 Å Binding residue (original residue number in PDB) A2 N3 I4 K5 S6 A7 K9 R10 Q13 S14 K16 R18 H20 N21 S23 R25 S26 R29 T30 K33 K34 Y36 Q55 D59 R60 H68 K69 N70 K71 A73 R74 H75 K76 A77 T80 Q82 Binding residue (residue number reindexed from 1) A1 N2 I3 K4 S5 A6 K8 R9 Q12 S13 K15 R17 H19 N20 S22 R24 S25 R28 T29 K32 K33 Y35 Q54 D58 R59 H67 K68 N69 K70 A72 R73 H74 K75 A76 T79 Q81

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003723 RNA binding GO:0003735 structural constituent of ribosome GO:0008073 ornithine decarboxylase inhibitor activity GO:0019843 rRNA binding GO:0070181 small ribosomal subunit rRNA binding

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component