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Structure of PDB 3jam Chain W Binding Site BS01

Receptor Information >3jam Chain W (length=129) Species: 28985 (Kluyveromyces lactis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] TRTSVLADALNAINNAEKTGKRQVLIRPSSKVIIKFLQVMQKHGYIGEFE YIDDHRSGKIVVQLNGRLNKCGVISPRFNVKIADVEKWTANLLPARQFGY VILTTSAGIMDHEEAHRKHVSGKILGFVY

Ligand information >3jam Chain 2 (length=1780) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uaucugguugauccugccaguagucauaugcuugucucaaagauuaagcc augcaugucuaaguauaagcaauuuauacagugaaacugcgaauggcuca uuaaaucaguuaucguuuauuugauaguuccuuuacuacauggauaucug ugguaauucuagagcuaauacaugcuuaaaaucucgacccuuuggaagag auguauuuauuagauaaaaaaucaaugucuucggacuccuugaugauuca uaauaacuuuucgaaucgcauggccuugugcuggcgaugguucauucaaa uuucugcccuaucaacuuucgaugguaggauaguggccuaccaugguuuc aacggguaacggggaauaaggguucgauuccggagagggagccugagaaa cggcuaccacauccaaggaaggcagcaggcgcgcaaauuacccaauccua auucagggagguagugacaauaaauaacgauacagggcccauucgggucu uguaauuggaaugaguacaauguaaauaccuuaacgaggaacaacuggag ggcaagucuggugccagcagccgcgguaauuccagcuccaguagcguaua uuaaaguuguugcaguuaaaaagcucguaguugaacuuugggucugguug uccggucgguuuuucaaccggaucuuuccuucuggcuaaccuguacuccu ugugggugcaggcgaaccaggacuuuuacuuugaaaaaauuagaguguuc aaagcaggcgaaagcucgaauauauuagcauggaauaauggaauaggacg uuugguucuauuuuguugguuucuaggaccaucguaaugauuaauaggga cggucgggggcaucaguauucaauugucagaggugaaauucuuggauuua uugaagacuaacuacugcgaaagcauuugccaaggacguuuucauuaauc aagaacgaaaguuaggggaucgaagaugaucagauaccgucguagucuua accauaaacuaugccgacuagggaucgggugguguuuuucuuaugaccca cucggcaccuuacgagaaaucaaagucuuuggguucuggggggaguaugg ucgcaaggcugaaacuuaaaggaauugacggaagggcaccaccaggagug gagccugcggcuuaauuugacucaacacggggaaacucaccagguccaga cacaauaaggauugacagauugagagcucuuucuugauuuuguggguggu ggugcauggccguucuuaguugguggagugauuugucugcuuaauugcga uaacgaacgagaccuuaaccuacuaaauaggguugcuggcacuugccggu ugacucuucuuagagggacuaucgguuucaagccgauggaaguuugaggc aauaacaggucugugaugcccuuagacguucugggccgcacgcgcgcuac acugacggagccagcgaguacaaccuuggccgagaggucuggguaaucuu gugaaacuccgucgugcuggggauagagcauuguaauuauugcucuucaa cgaggaauuccuaguaagcgcaagucaucagcuugcguugauuacguccc ugcccuuuguacacaccgcccgucgcuaguaccgauugaauggcuuagug aggccucaggauuugcuuagagaagggggcaacuccaucucagagcgaag aaucuggucaaacuuggucauuuagaggaacuaaaagucguaacaagguu uccguaggugaaccugcggaaggaucauua ...<<<<<.{.[[[[>>>>><<<<.<<<<<<...<.<...<......<<< .<<<..<<....<<....<<..........>>...>>.>>......<<.. ......<<<..<<..<<....<<<<...............<<.....<<. <<.......>>.>>......>>........<<<<<..<<....>>..>>> >><..<<.<<<<......(((((((.<<<....>>>.............. >>>>>>.....>...<<<<..<<<.....>>>.>>>>..>.>>>...>>> >..>>>.<<<....<<<....<<<<<<<<.......>>>>>>>>>>>... ...>>>...<<<.<<<<....>>>>....>>>.>>.<<.<<<........ ..>>>.>>.<.<<<..>>>.>...>>>>>>.........<<<....<<<. ....>>>..>>>..>....>.>.....<<<<<<<<<<..........>>> >>>>.>>>......<<..<...........>..>>.........<<<<<( (......<<<<.....<<..))>>.......>>>>.>>>>>..>>>>>>> >>>.........<<<[[.....<.<<...<<<.<<....<<<<<<<<<<< .....<..>.....>>>>>>>>>>>....<<<<<<....<<<<..<<... ....>>..>>>>....>>>>>>...<<<<<.<<.......<<...<.... ...>..<<<....>>>....>>......>>.>>..>>>.........<<< ..<<<<<<<<.....))))))).>>>>>>>>.>>>.....>>....<<<< <<.<<...<<<<..<<<.<<<<<<.<...<<<......>>>......>.> >>>>.>>>>.......<<....>>...>>>>...>>>>>.>>>...>>>. ..>>.>....<<<<<<<...<...<<<<.<.....>.>>>>...>>>>>> >>..........<<<.<<.<<<..<<<<<<<<.<<<........>>>>>> >>>>>..>>>...<<..]]>>...>>.....>>>.>>>.<<<......<< <<....>>>>....>>>..]]]].}<<<<<.<<<<<<<..<<.<<<<<<. .<<<.<<<<<<......<<........>>..........<<<<<.<.... <<<<<.....<..<<.<............>.>>.>....>>>>>...<<. <<<..<<.<<<<<<....<<<.<<<<<....>>>...<<<......>>>. ..>>.>>>....<<<<<.<<..<<<<..<<<<<<<<<<<<....>>>>>> .>>>>>>..>>>>.>>....<<<<<<.....>>>>>>.......>>>>>. ...>>>.>>>.....>>>>>>>.....>.>>>>>...>>.>>>>.>>>.. ...<<<<<<<......<<.....<<<.<<<<....>>>>.>>>....>>. ......>>>>>>>......<....<<<<<<..........>>>>>>.... >.....>>>>>>....<<<<<<<<.......>>>>>>>>......>>... >>>>>>>>>>.>>....<..<<.<..<<<<.<<....<<<<<<<<.<<<. .<<<<..<...<<<<<<..........................>>>>>>. ..>..>>>>..>>>.>>>>>>>>...>>.>>>>...>.>>...>.....< <<<<<<<<....>>>>>>>>>.........

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 3jam Conformational Differences between Open and Closed States of the Eukaryotic Translation Initiation Complex. Resolution 3.46 Å Binding residue (original residue number in PDB) T2 R3 T4 V6 N12 N16 K19 K22 R28 S31 K32 H56 R57 S58 K60 K71 V74 I75 S76 R78 N80 K82 I83 K88 W89 T105 T106 S107 I110 R118 K119 H120 S122 F128 Y130 Binding residue (residue number reindexed from 1) T1 R2 T3 V5 N11 N15 K18 K21 R27 S30 K31 H55 R56 S57 K59 K70 V73 I74 S75 R77 N79 K81 I82 K87 W88 T104 T105 S106 I109 R117 K118 H119 S121 F127 Y129

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003735 structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

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View graph for Cellular Component