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Structure of PDB 4lsk Chain YO Binding Site BS01

Receptor Information >4lsk Chain YO (length=122) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRG AVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINNQLEPRGTRVFG PVARELREKGFMKIVSLAPEVL

Ligand information >4lsk Chain XA (length=1500) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] uggagaguuugauccuggcucagggugaacgcuggcggcgugccuaagac augcaagucgugcgggccgcggggacuccguggucagcggcggacgggug aguaacgcgugggugaccuacccggaagagggggacaacccggggaaacu cgggcuaaucccccauguggacccgccccuugggguguguccaaagggcu uugcccgcuuccggaugggcccgcgucccaucagcuaguuggugggguaa uggcccaccaaggcgacgacggguagccggucugagaggauggccggcca caggggcacugagacacgggccccacuccuacgggaggcagcaguuagga aucuuccgcaaugggcgcaagccugacggagcgacgccgcuuggaggaag aagcccuucgggguguaaacuccugaacccgggacgaaacccccgacgag gggacugacgguaccgggguaauagcgccggccaacuccgugccagcagc cgcgguaauacggagggcgcgagcguuacccggauucacugggcguaaag ggcguguaggcggccuggggcgucccaugugaaagaccacggcucaaccg ugggggagcgugggauacgcucaggcuagacggugggagaggguggugga auucccggaguagcggugaaaugcgcagauaccgggaggaacgccgaugg cgaaggcagccaccugguccacccgugacgcugaggcgcgaaagcguggg gagcaaaccggauuagauacccggguaguccacgcccuaaacgaugcgcg cuaggucucugggucuccugggggccgaagcuaacgcguuaagcgcgccg ccuggggaguacggccgcaaggcugaaacucaaaggaauugacgggggcc cgcacaagcgguggagcaugugguuuaauucgaagcaacgcgaagaaccu uaccaggccuugacaugcuagggaacccgggugaaagccuggggugcccc gcgaggggagcccuagcacaggugcugcauggccgucgucagcucgugcc gugagguguuggguuaagucccgcaacgagcgcaacccccgccguuaguu gccagcgguucggccgggcacucuaacgggacugcccgcgaaagcgggag gaaggaggggacgacgucuggucagcauggcccuuacggccugggcgaca cacgugcuacaaugcccacuacaaagcgaugccacccggcaacggggagc uaaucgcaaaaaggugggcccaguucggauuggggucugcaacccgaccc caugaagccggaaucgcuaguaaucgcggaucagccaugccgcggugaau acguucccgggccuuguacacaccgcccgucacgccaugggagcgggcuc uacccgaagucgccgggagccuacgggcaggcgccgaggguagggcccgu gacuggggcgaagucguaacaagguagcuguaccggaaggugcggcugga ....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..<<< .<<<..<<<..<<.<<<<<<<<<...>>>>>>>>>.>>>>>......<<. ......<<<<<<<<..<<...<<<<<<<.<<<<<....<<<<<......> >>>>.....>>>>>...<<<<<.<<<<<....>>>>>.>>>>>..<<<<. ..>>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<<.... ...>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.> >.<<<<<.<.........>>>>>>.<<<<....>>>>...>>>>>>>... .....<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<.... ..<<<<<..>>>>>.....>>>>....<<<<<........<<<<.....> >>>..........>>>>>......<<<<<(((...<<<<<.....<<.)) )>>.......>>>>>>>>>>..>>>>>>>>>..........<<<((.... .<<<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.....>>> >>>....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<<<... .<<<<<<<.<..<<<......>>>.....>.>>>>>>>...........< <....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<<<<<. ..<<...<<<<.<.....>.>>>>...>>>>>>>>..........<<<<< <..<<<<<<<<<<...>>>>>>>>>>...<<..))>>.....>>>>>>.> >>.<<<......<<<<....>>>>....>>>..)))).]<<<<<.<<<<< <<.<<.<<<<<<..<<<<<<<<<<......<<........>>........ ..<<<<<<<......<<<<<<<<..<<<<<<<....>>>>>>>...<<<. .....>>>..>>>>>>>>.<<<.<<<..<<<<<<.......<<<<<<<<< ....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<.. .<...<<<.....>>>.>....>>>>>>>.....<<<<<....>>>>>.. ......>>>>.........>>>...>>>>>>>>>...>>>>>>>...>>. >>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>>..>> ....>>>.....>>>>>>>......<....<<<<<<<........>>>>> >>....>.....>>>>>>....<<<<<<<..........>>>>>>>.... ..>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<<<<<< <<<<<...<.<<<<....<<<....>>>.>>>>.>..>>>>>>>>>>>>> ..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>>>>...

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 4lsk Structural insights into +1 frameshifting promoted by expanded or modification-deficient anticodon stem loops. Resolution 3.48001 Å Binding residue (original residue number in PDB) N13 P48 R49 R97 S116 A118 Binding residue (residue number reindexed from 1) N13 P48 R49 R97 S116 A118

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003735 structural constituent of ribosome GO:0019843 rRNA binding GO:0070180 large ribosomal subunit rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component