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Structure of PDB 7qgn Chain u Binding Site BS01

Receptor Information >7qgn Chain u (length=85) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure] NIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFN EMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA

Ligand information >7qgn Chain 0 (length=1532) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure] aauugaagaguuugaucauggcucagauugaacgcuggcggcaggccuaa cacaugcaagucgaacgguaacaggaagaagcuugcuucuuugcugacga guggcggacgggugaguaaugucugggaaacugccugauggagggggaua acuacuggaaacgguagcuaauaccgcauaacgucgcaagaccaaagagg gggaccuucgggccucuugccaucggaugugcccagaugggauuagcuag uaggugggguaacggcucaccuaggcgacgaucccuagcuggucugagag gaugaccagccacacuggaacugagacacgguccagacuccuacgggagg cagcaguggggaauauugcacaaugggcgcaagccugaugcagccaugcc gcguguaugaagaaggccuucggguuguaaaguacuuucagcggggagga agggaguaaaguuaauaccuuugcucauugacguuacccgcagaagaagc accggcuaacuccgugccagcagccgcgguaauacggagggugcaagcgu uaaucggaauuacugggcguaaagcgcacgcaggcgguuuguuaagucag augugaaauccccgggcucaaccugggaacugcaucugauacuggcaagc uugagucucguagagggggguagaauuccagguguagcggugaaaugcgu agagaucuggaggaauaccgguggcgaaggcggcccccuggacgaagacu gacgcucaggugcgaaagcguggggagcaaacaggauuagauacccuggu aguccacgccguaaacgaugucgacuuggagguugugcccuugaggcgug gcuuccggagcuaacgcguuaagucgaccgccuggggaguacggccgcaa gguuaaaacucaaaugaauugacgggggcccgcacaagcgguggagcaug ugguuuaauucgaugcaacgcgaagaaccuuaccuggucuugacauccac ggaaguuuucagagaugagaaugugccuucgggaaccgugagacaggugc ugcauggcugucgucagcucguguugugaaauguuggguuaagucccgca acgagcgcaacccuuauccuuuguugccagcgguccggccgggaacucaa aggagacugccagugauaaacuggaggaagguggggaugacgucaaguca ucauggcccuuacgaccagggcuacacacgugcuacaauggcgcauacaa agagaagcgaccucgcgagagcaagcggaccucauaaagugcgucguagu ccggauuggagucugcaacucgacuccaugaagucggaaucgcuaguaau cguggaucagaaugccacggugaauacguucccgggccuuguacacaccg cccgucacaccaugggaguggguugcaaaagaaguagguagcuuaaccuu cgggagggcgcuuaccacuuugugauucaugacuggggugaagucguaac aagguaaccguaggggaaccugcgguuggauc .......<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..... <<<.<<<..<<<..<<.<<..<<<<<<<<<<....>>>>>>>.>>>>>.. >>>>>......<<.......<<<<<<<..<<...<<<<<<<.<.<<.... .<<<<<......>>>>>......>>.>.....<<<....>>>....<<<< <<..<<....>>>>>>>>.>>>>>>>..>>.>>>>>>><<<....<<<.. <<<<<<<.........>>>>>>>>>>......>>>..<<<<<<<<....> >>>...>>>>.>>.<<<<<.<.........>>>>>>.<<<<....>>>>. ..>>>>>>.........<<<....<<<<....>>>>..>>>..>>.>>>> >>..<<<<......<<<<....>>>>.....>>>>..<<.<<<<<..... .<.<<<<<<<<.......>>>>>>>>.>........>>>>>....>>.<< <<<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>> >>>>>..........<<<((.....<<<<...<<<.<<<<<<<.<<<<<< <<<<......<<<<<<.....>>>>>>....>>>>>>>>..>>>>>>>>> ...<<<<<<<<...<<<<<<<....<<<<<<<<...<<<......>>>.. ....>>>>>>>>...........<<....>>.>>>>>>>..>>>>.>>>> ...>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>.. .>>>>>>>>..........<<<<<<.<<<<<<<<<<<<<.....>>>>>> >>>>>>>..<<..))>>.....>>>>>>.>>>.<<<......<<<<.... >>>>....>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<< <<<<......<<........>>..........<<<<<<<......<<<<< <<...<<<.<<....>>>.>>....<<....>>..>>>>>.>>.<<<.<< <..<<<<<<.......<<<<<<<<<....>>>..<<<<......>>>>.. >>>>>>.....<<<<.<<<<<<<...<<..<<<.....>>>>>....>>> >>>>.....<<<<<.....>>>>>........>>>>.........>>>.. .>>>>>>>>>...>>>>>>>...>>.>>>>>>>>.....<<<<<<<.... .<<<..<<...<<<....>>>...>>....>>>.....>>>>>>>..... .<....<<<<<<<........>>>>>>>....>.....>>>>>>....<< <<<<<.........>>>>>>>......>>...>>>>>>>>>>.>>....< ..<<.<.<<<<.<<<..<<<<<<<<<<<<....<<<<<<.<<<<..<<.. ..>>.>>>>>>>>>>...>>>>>>>>>>>>..>>>.>>>>..>.>>...> .....<<<<<<<<<....>>>>>>>>>.....

Receptor-Ligand Complex Structure Global view Local view Structure summary [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] [Spin on] [Spin off] [Reset] [High quality] [Low quality] [White background] [Black background] PDB 7qgn Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria. Resolution 3.37 Å Binding residue (original residue number in PDB) N3 K5 S6 K9 R10 Q13 S14 K16 R18 H20 N21 S23 R24 S26 R29 T30 K34 Q55 P56 D59 R60 K64 N70 K71 A73 R74 K76 T80 Binding residue (residue number reindexed from 1) N1 K3 S4 K7 R8 Q11 S12 K14 R16 H18 N19 S21 R22 S24 R27 T28 K32 Q53 P54 D57 R58 K62 N68 K69 A71 R72 K74 T78

Enzymatic activity Enzyme Commision number ?

Gene Ontology Molecular Function GO:0003723 RNA binding GO:0003735 structural constituent of ribosome GO:0019843 rRNA binding GO:0070181 small ribosomal subunit rRNA binding

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0006412	translation

	Cellular Component
GO:0005829	cytosol
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for Molecular Function

View graph for Biological Process

View graph for Cellular Component