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BioLiP

Structure of PDB 6dp8 Chain A Binding Site BS03

Receptor Information
>6dp8 Chain A (length=136) Species: 272558 (Halalkalibacterium halodurans C-125) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEF
LAIVHGLRYLKERNSRKPIYSDSQTAIKWVKDKKAKSTLVRNEETALIWK
LVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6dp8 Cation trafficking propels RNA hydrolysis.
Resolution1.323 Å
Binding residue
(original residue number in PDB)		N77 P78 T104 N105 N106 T135 K138 W139 S147 T148
Binding residue
(residue number reindexed from 1)		N17 P18 T44 N45 N46 T75 K78 W79 S87 T88
Enzymatic activity
Enzyme Commision number 3.1.26.4: ribonuclease H.
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0004523 RNA-DNA hybrid ribonuclease activity

View graph for
Molecular Function
External links
PDB RCSB:6dp8, PDBe:6dp8, PDBj:6dp8
PDBsum6dp8
PubMed30076410
UniProtQ9KEI9|RNH1_HALH5 Ribonuclease H (Gene Name=rnhA)

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