PPS-align: a protein pocket structural alignment server

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PPS-align RESULTS PAGE

Name of Query Pocket:   1ha3_GDP_A_406
Name of Template Pocket:   3ec1_GDP_A_900
Amino Acid Number of Query Pocket:  16
Amino Acid Number of Template Pocket:  15

PPS-align Results (Download the detail output)

PPS-score:
PPS-score = 0.6857 P-value = 0.00070137
Jaccard Ratio: 0.6316
RMSD of the aligned residues: 0.9269
Sequence Identity: 0.5000

Alignment Information:
(":" denotes aligned amino acid pairs of d < 1.0 A, "." denotes other aligned residues)

Query AA Index:	20	21	23	24	25	26	83	136	137	139	140	176
Query AA Type:	V	D	G	K	T	T	P	N	K	D	M	L
Aligned Tag:	.	:	:	:	:	:	.	:	:	:	:	:
Templ AA Type:	T	N	G	K	S	T	G	N	K	D	L	A
Templ AA Index:	171	172	174	175	176	177	221	106	107	109	110	144

Visualization (Query pocket in yellow and template pocket in red)

Pocket structural alignment (Download the superposition)