Search found 71 matches
- Tue Mar 29, 2022 5:27 pm
- Forum: Main Forum
- Topic: COACH job still pending
- Replies: 6
- Views: 5014
Re: COACH job still pending
Dear all, the COACH server is currently heavily loaded due to I/O issues. We are working on resolving the issues and apologize for any inconveniences this causes.
- Thu Mar 24, 2022 5:56 pm
- Forum: Main Forum
- Topic: converting .sdf files to .pdb/.pdbqt
- Replies: 1
- Views: 1974
Re: converting .sdf files to .pdb/.pdbqt
We are not maintainer or developer of OpenBabel and are not entitled to assist you with the issue. You should ask your questions at http://openbabel.org/wiki/Help
- Wed Mar 23, 2022 2:22 pm
- Forum: Main Forum
- Topic: BioLiP coordinates
- Replies: 2
- Views: 2215
Re: BioLiP coordinates
If you need to download BioLiP dataset, you may want to use https://zhanggroup.org/BioLiP/download.html rather than "browse".
- Wed Mar 23, 2022 2:21 pm
- Forum: Main Forum
- Topic: BioLiP coordinates
- Replies: 2
- Views: 2215
Re: BioLiP coordinates
"renumbered to 1" means that we reindex residue numbers (column 23-26 of the PDB atomic coordinate http://www.wwpdb.org/documentation/file-format-content/format33/sect9.html#ATOM) such that the first residue is residue 1, the second residue is residue 2 etc. It is not related to residue nu...
- Sat Mar 19, 2022 3:38 pm
- Forum: Main Forum
- Topic: COFACTOR Query (Delayed?)
- Replies: 9
- Views: 5717
Re: COFACTOR Query (Delayed?)
I checked your email sabrina*@uga.edu. Its latest job submission was the job submitted on 2021-12-05 mentioned above. In fact, there is no job submission from @uga.edu on March 14 based on our system record.
- Tue Mar 15, 2022 1:29 pm
- Forum: Main Forum
- Topic: I-TASSER no result/update received
- Replies: 1
- Views: 1850
Re: I-TASSER no result/update received
The only job submitted on March 13 by you is 13545 S675386-> LEA( 13) m*@student.usm.my 60.49.110.64 Sun Mar 13 09:44:59 EDT 2022 MDAKDGLKEKAGE It was already completed at https://zhanggroup.org/I-TASSER/output/S675386/. In general, you can search your active jobs at https://zhanggroup.org/I-TASSER/...
- Tue Mar 15, 2022 11:54 am
- Forum: Main Forum
- Topic: COFACTOR Query (Delayed?)
- Replies: 9
- Views: 5717
Re: COFACTOR Query (Delayed?)
You should have received an email within 15 minutes after the submission to confirm your job , and another upon job completion. If you did not receive the email, most likely it was sorted into your spam mail box.
- Fri Mar 11, 2022 11:19 pm
- Forum: Main Forum
- Topic: COACH job still pending
- Replies: 6
- Views: 5014
Re: COACH job still pending
I have manually restarted job CH2099407192. If you still cannot get your result next week, please let us know.
- Fri Mar 11, 2022 11:13 pm
- Forum: Main Forum
- Topic: COFACTOR Query (Delayed?)
- Replies: 9
- Views: 5717
Re: COFACTOR Query (Delayed?)
The last job you submitted was
MCF9006 s****@uga.edu 2021-12-05 20:50:01.311277 529 TcINO1
which is more than three months ago. We only retain your data ranging from 1 to 3 months due to limited disk space.
MCF9006 s****@uga.edu 2021-12-05 20:50:01.311277 529 TcINO1
which is more than three months ago. We only retain your data ranging from 1 to 3 months due to limited disk space.
- Mon Nov 29, 2021 1:43 am
- Forum: Main Forum
- Topic: parsing TM-align output to report protein domain PAV and coords
- Replies: 3
- Views: 2786
Re: parsing TM-align output to report protein domain PAV and coords
6. The default value of -a is F. Whether or not -a is F, TM-align can return result even if Length(Full_length.pdb)<Length(QUERY1.pdb). Therefore, there is not need for you to set it to a non-default value. 7. No, TM-align will not refuse to report an alignment even if the TM-score is very low, unle...