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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
To facilitate template-based protein-ligand docking and protein function annotation, all data from the BioLiP database are freely available. You can download them from the links provided below.

  • BioLiP raw data
    Download structures for protein-ligand interactions.
    Download ligand summary (see readme_ligand.txt for explanation).
    Download redundant dataset
    LinkDescription
    BioLiP.txt.gzAnnotations for each ligand-protein interaction site (readme)
    protein.fasta.gzProtein receptor sequences
    dna.fasta.gzDNA ligand sequences
    rna.fasta.gzRNA ligand sequences
    peptide.fasta.gzPeptide ligand sequences
    Download non-redundant dataset
    LinkDescription
    BioLiP_nr.txt.gzAnnotations for each ligand-protein interaction site (readme)
    protein_nr.fasta.gzProtein receptor sequences clustered with 90% identity cutoff
    dna_nr.fasta.gzDNA ligand sequences clustered with 100% identity cutoff
    rna_nr.fasta.gzRNA ligand sequences clustered with 100% identity cutoff
    peptide_nr.fasta.gzPeptide ligand sequences clustered with 100% identity cutoff
    All sequences are converted from residues with experimentally determined coordinates in the structure; residues unobserved in the structure are excluded.


  • BioLiP source code
    Download the source code for BioLiP database curation and web interface display


  • Template library for protein function prediction by COACH and COFACTOR
    Download the library


  • Standalone package for protein function prediction by COACH and COFACTOR
    Donwload through the I-TASSER Suite

  • Reference:
    Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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