Zhanglab forum

Dear yang,

Please check if the memory you requested is enough or not.

Best Regards
Wei Zheng

Dear Maria,

In this case, Jsmol colors the structure from N (blue) to C (red) terminus with a rainbow scale.

Best Regards
Wei Zheng

Dear Gary,

Thank you for the bug reporting. Yes, it is a typo bug in the code. We have fixed this issue and released new version of DMFold and DeepMSA2 packages.

https://zhanggroup.org/DMFold/download/
https://zhanggroup.org/DeepMSA2/download/

Best Regards
Wei Zheng

Hi Maria,

What server did you use?

Best Regards
Wei Zheng

Dear user,

Your job is ready now.

Best Regards
Wei Zheng

Hi Wyzin

You can access your job by https://zhanggroup.org/DMFold/output/DMF482643047 as one example,

Best Regards
Wei Zheng

Dear user, Your job IDs are DMF482643047 and DMF349023445. BTW, we found some users' emails could not receive our email for unknown reasons (I also have this issue with one of my Gmail..., but not with other one, it should be issue on email side), so I would suggest you change to another email next ...

Dear user,

Your job is ready at https://zhanggroup.org/I-TASSER/output/S769904/; our server has been overloaded recently, so the jobs may take longer time than usual.

Thank you

Best Regards
Wei Zheng

Dear user, DeepMSA2 and DMFold can output paired MSA and single MSAs. you can find one example in DMFold example folder example/AF2Models/aMSA-aMSA/multi2.2-v4/seq/msas/paired.aln and example/AF2Models/aMSA-aMSA/multi2.2-v4/seq/msas/A DMFold itself accepts customs MSAs, and you can check details at ...

Dear user, It is possible that two-runs have different results with I-TASSER server, I-TASSER depends on templates, and the template library updates every week. You can always trust the one with a higher confidence score. BTW, if the model quality is not good, it is also possible that two-runs have ...